Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1738 ATGTACTCGAGTCCTTTAGTGCGGTCTCTTCCGCGTGTTAATACTGTTCCTGGAGTTATTTCTGACATAGATGGGGAAAAAGGTGCTGATGTTGATGATTCACATGCTTCCTCATCAGAACATCGTCAAAAGATAATCATTGTAGCAAATTTTCTTCCCCTTAATGCTCATAAGGACAAAGATTCAGGCAGATGGTGCCTTTTCTATGATAAAGATTCGATTTTGTGTCAAATAAAAGATGCTATTTCTTGTGATACCGATGTTGTTTATGTAGGATCTTTGAAGGTTGATGTTTATGAAAGACTCTGCCTGTCAGATGAAATTTTGAAAGCACTTCTCAATGCGGATTTAATTGGCTTTGATACATTTGATTATGCTCGTCATTTCTTATCTTGTTGCAATCGAATGCTTGGCTTGGAATATGAATCCAAAAGGGGCTACATTGGACTTGATTACTATGGCCGCACAGTATACATTAAAATCTTGCCAGTAGGAATTCACATGGCCAGGCTTCAATCTGCCATAGATCACCCATCTTCTAATCCAGAACTGCTAGGTGAACTAGTACTAGTCCAAATTGTAAATCCCCCAAAAAGTTCAGGCAAAGATGTTGAGGAAGCAAAGAAGGAGATACACATGATTGCTAACAGGATAAATGGAAGATTCAGTTGGCTAAATTATGAACCTTTGATCATCATAGATCATCCTGCTCCTTTCTATGAGAAGATAGCCTATTATTCCTTGGCAGAATGTTGCATCGTGAATGCTATCTCCCTTGTACAAGTCCACTTGTTGTTTGAGTTTATCAGTTGCTCACCATCTCTTAGTGGGGCATTGAGGGTGAACCCATGGGACATTAGTGCTGTAGCTGATGCGATAAATTTGGCCATCAGCATGTCTATTGTGGAGAAACAGTTACGGCATGAGAAGCACTATCGGTACTACGTGGACGATACTGCTGAGGTGATGATGTTGCTTAAAAGCCTTGGTACTGCTTCAAGGCTTAAACCAGTATGTGATGATGAGGAAGAAGTTCCTTCTGAGACAGAAGCAAGATGGAGTGAGAAACTACACGGTCCCAGTCGCCCTTGGCAGAGTGAAAGAAAGGAAGACGAAGACGAAGCTACGACTACACCAATTCTGAGCCCCAAAAAAATGACGTCCGTTTGCTTCACTCTCTTCTCCGTTTTTCTCATCGCCACCCTTCCCAACTTACAGGGATATGCTGCAAGTGATCTTCACATCAGATCACAATCGCCGTTCTCCGTCGCTCTTGAAACCCTCCAGAAGCAATTAGGCTATACCTTCAAGAGCATTGGCCTACTTCGTCGTGCCATGACTCATGCTTCCTTCTCAGAAGAGAACAACAGAGCTTTGAGCATTCTGGGCGCCAATGTCATCGAAACAGCTGTCTCTTTCCAGTCACTTTCAAAAGACATTGACATCTCTTCGAAAGATCTGAGTCGTAGAATAGCGGAATTCTCCAACGTGGAATCTTCATGCACTGGAGATGCATTGCGGTTGGGTTTGCAAAAGATAGTTCGGGTTTCACCCAAGACCAATTCTTCTGCACCTTCTGTGGTTTGTGGTGCTTTCCGTGCAATCTTTGGTGCTATTGCTATTGATACCGCAAACTGCGATGCTGCAGGCAACGTTTTCTGGGCCGTTCACGGGGGTAAGGTCGGGGTTGCTCTGCCATTTTGA 1704 0.4331 MYSSPLVRSLPRVNTVPGVISDIDGEKGADVDDSHASSSEHRQKIIIVANFLPLNAHKDKDSGRWCLFYDKDSILCQIKDAISCDTDVVYVGSLKVDVYERLCLSDEILKALLNADLIGFDTFDYARHFLSCCNRMLGLEYESKRGYIGLDYYGRTVYIKILPVGIHMARLQSAIDHPSSNPELLGELVLVQIVNPPKSSGKDVEEAKKEIHMIANRINGRFSWLNYEPLIIIDHPAPFYEKIAYYSLAECCIVNAISLVQVHLLFEFISCSPSLSGALRVNPWDISAVADAINLAISMSIVEKQLRHEKHYRYYVDDTAEVMMLLKSLGTASRLKPVCDDEEEVPSETEARWSEKLHGPSRPWQSERKEDEDEATTTPILSPKKMTSVCFTLFSVFLIATLPNLQGYAASDLHIRSQSPFSVALETLQKQLGYTFKSIGLLRRAMTHASFSEENNRALSILGANVIETAVSFQSLSKDIDISSKDLSRRIAEFSNVESSCTGDALRLGLQKIVRVSPKTNSSAPSVVCGAFRAIFGAIAIDTANCDAAGNVFWAVHGGKVGVALPF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1738 567 SMART riboneu5 440 566 IPR000999 GO:0004525|GO:0006396
Lele24g1738 567 Gene3D Glycogen Phosphorylase B; 94 173 - -
Lele24g1738 567 MobiDBLite consensus disorder prediction 349 377 - -
Lele24g1738 567 Pfam Ribonuclease-III-like 441 544 IPR000999 GO:0004525|GO:0006396
Lele24g1738 567 SUPERFAMILY RNase III domain-like 419 556 IPR036389 GO:0004525|GO:0006396
Lele24g1738 567 MobiDBLite consensus disorder prediction 339 377 - -
Lele24g1738 567 Pfam Glycosyltransferase family 20 96 178 IPR001830 GO:0003824|GO:0005992
Lele24g1738 567 Pfam Glycosyltransferase family 20 180 318 IPR001830 GO:0003824|GO:0005992
Lele24g1738 567 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 12 98 IPR001830 GO:0003824|GO:0005992
Lele24g1738 567 Gene3D Glycogen Phosphorylase B; 174 315 - -
Lele24g1738 567 Gene3D Ribonuclease III domain 424 556 IPR036389 GO:0004525|GO:0006396
Lele24g1738 567 FunFam Protein NUCLEAR FUSION DEFECTIVE 2 423 559 - -
Lele24g1738 567 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 44 319 - -
Lele24g1738 567 ProSiteProfiles Ribonuclease III family domain profile. 425 544 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1738 Lele-ChrLele24 22635085 22640197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1738 8 98 Trehalose Biosynthesis Gene Families AT1G23870 49.451 1.57e-20 94.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1738 24 22635085 22640197 Lele24g1738 24 22635085 22640197 ECH
Lele21g1802 21 25662794 25669459 Lele24g1738 24 22635085 22640197 hybridization
Lele22g1779 22 22991596 22992400 Lele24g1738 24 22635085 22640197 hybridization