Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1713 ATGGAGAATCCGTTTGACTTCCGCTTTACCGCCGGATACTCTGAGCAGTCGCCGATGGCTCCATCGTTGCAGAAGACTGGTTTCCAGGAGGAATTCACGTCACCGGCTCACCACGTGGTTCCTCTGAGCTGGACATCTTCAATAGGACCAGAACAATTAGCCCGGTCCAGTTCTTCTTCATCGGCGCCAGATGCTCCGTCGTCATTGATGGTGGAGCTTCAGAGAGTGGAAGCTGGACCGGAGGAGGACGAGGAGGATTCTAAAAAACTTCGCTCTAAAATCTTTTGCCACCCTTTGTATCCTAAACTTCTGGATGCCTACATCGATTGCCAAAAGGTTGGAGCGCCGCCGGAGATAGCAAAATTGTTCGACGAAATCGGACGAGAGAATGGCGATCTATGTCAGAGATCTACTTACGTGGCTGCCGATCCCGATCTCGATGAATTCATGGAAACGTATTGCGACTTACTGGTGAAGTACAAATCGGATCTCTCGAAGCCTTTTGACGAAGCAACCGCGTTTCTTAACGACATGGAAATGCAGCTTAACTCCCTCTGTAACGGCCATTCCCGAAACTACCATTCTGATGAAGGTACTGGATCATCCGGGGATGGCATTAGTAAGGAAGAGAAAGAAGAAAACGAGTCAAAGAGAATCACTGAGGATCGAGAGTTGAAGGACAAACTTCTTCGTAGATATAGTGGATATATTATTGGTCTAAAGCATGAATTTTCTAAAAAGAAAAAGAAAGAGAGGCTACCCAAAGAAGCGAGACAAATATTGCTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACGGAAGCGGATAAGGTTGCATTAGCTGAATGGACAGGTCTGGACCAAAAGCAAATAAACAATTGGTTTATAAATCAAAGGAAGCGCCATTGGAAGCCAACGGAGGAAATGCAAGCAGCAGTTTTGGATGGCCTCTATGGACCTTTTTCCACCAGTGATTGA 984 0.4644 MENPFDFRFTAGYSEQSPMAPSLQKTGFQEEFTSPAHHVVPLSWTSSIGPEQLARSSSSSSAPDAPSSLMVELQRVEAGPEEDEEDSKKLRSKIFCHPLYPKLLDAYIDCQKVGAPPEIAKLFDEIGRENGDLCQRSTYVAADPDLDEFMETYCDLLVKYKSDLSKPFDEATAFLNDMEMQLNSLCNGHSRNYHSDEGTGSSGDGISKEEKEENESKRITEDRELKDKLLRRYSGYIIGLKHEFSKKKKKERLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVLDGLYGPFSTSD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1713 327 MobiDBLite consensus disorder prediction 189 220 - -
Lele24g1713 327 MobiDBLite consensus disorder prediction 50 70 - -
Lele24g1713 327 ProSitePatterns 'Homeobox' domain signature. 282 305 IPR017970 GO:0000981|GO:0006355
Lele24g1713 327 MobiDBLite consensus disorder prediction 15 31 - -
Lele24g1713 327 Pfam ELK domain 224 245 IPR005539 GO:0003677
Lele24g1713 327 Pfam KNOX1 domain 90 130 IPR005540 GO:0003677|GO:0005634
Lele24g1713 327 CDD homeodomain 252 307 IPR001356 GO:0003677
Lele24g1713 327 MobiDBLite consensus disorder prediction 50 67 - -
Lele24g1713 327 SMART KNOX2_2 136 187 IPR005541 GO:0003677|GO:0005634
Lele24g1713 327 SMART HOX_1 246 311 IPR001356 GO:0003677
Lele24g1713 327 ProSiteProfiles ELK domain profile. 224 244 IPR005539 GO:0003677
Lele24g1713 327 Pfam Homeobox KN domain 264 303 IPR008422 GO:0003677|GO:0006355
Lele24g1713 327 ProSiteProfiles 'Homeobox' domain profile. 244 307 IPR001356 GO:0003677
Lele24g1713 327 SMART KNOX1_2 88 132 IPR005540 GO:0003677|GO:0005634
Lele24g1713 327 SMART ELK_2 224 245 IPR005539 GO:0003677
Lele24g1713 327 SUPERFAMILY Homeodomain-like 245 319 IPR009057 -
Lele24g1713 327 Gene3D - 242 315 - -
Lele24g1713 327 Pfam KNOX2 domain 140 186 IPR005541 GO:0003677|GO:0005634
Lele24g1713 327 MobiDBLite consensus disorder prediction 1 31 - -
Lele24g1713 327 MobiDBLite consensus disorder prediction 203 220 - -
Lele24g1713 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 101 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1713 Lele-ChrLele24 22435711 22443444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1713 1 325 Homeobox Transcription Factor Family AT1G23380 49.850 1.70e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele24g1713 KNOX2 1.9e-23 No_clan