Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1687 ATGCTCAGGATCCTCGGCCACAGACCTGACCATGAATCCGTCGACAATGCCAAGGCCAAGCTGGCTGATTTGGATGCCCATTTGTCCCGACAGCTCGAGGAGATCGTTCTCTCGCCTAAGCCTGCTCATCTCGAAACCCATCAATGGCGGAGTCGGCTGGCGGAGAAAGAGAAGGCGTGCAGGAAATTAGGGGAGGATGAGAAGCGAGTGTATAAAGCAGTGATACAATTGGATGAGATGCACGATACGTACGAGAAGTATCTGAAGGATGCGGAGAAAAGACTGGAAGCGATTTACAATTCCGTCGACGGAGTACCAGATCCCGAGGAAGAAAAGTCGGAGACGGAGGAGGTAAATGAAGAGGTGGAGATTCCTGACGCGGTTGCCGGACTCCAAAATCTTGAGGAGCTTAACGTATCTGCAAATCATTTGGAATCACTTCGGGATTCAATTGGGTTGCTTCAAAAGTTGAAAATCCTGAATGTCTCGACAAACAAACTTACCGCCCTTCCTGACTCCATCTCTCGGTGCAGGTATTTGCCTACAAATATTGGATATGAGTTGCAGAACTTGAAGAAGCTGTTGATTAATCTGAACAAACTTCGGTCGCTTCTCTCAACTGTTTGTGAGATGAGATCCTTGCGCTATCTGGATGCCCATTTCAATGAGCTGAATGGACTTCCAAGCCAATTTGGAAGATTGACTAACCTTGAGGTGCTGGACCTGAGCAGTAATTTCATCGACCTTCAAGAACTTCCGGCGACATTCTGTGATCTGATTAACCTCAGGGAGTTGGATCTGAGCAACAACCAGATCAGTGAACTTCCAGACACATTTGGTGGGCTGGAGGATTTGAAGAAACTGAACTTGGAGCAGAACCCTCTCGAAGTGCCACTAGAATAG 903 0.4773 MLRILGHRPDHESVDNAKAKLADLDAHLSRQLEEIVLSPKPAHLETHQWRSRLAEKEKACRKLGEDEKRVYKAVIQLDEMHDTYEKYLKDAEKRLEAIYNSVDGVPDPEEEKSETEEVNEEVEIPDAVAGLQNLEELNVSANHLESLRDSIGLLQKLKILNVSTNKLTALPDSISRCRYLPTNIGYELQNLKKLLINLNKLRSLLSTVCEMRSLRYLDAHFNELNGLPSQFGRLTNLEVLDLSSNFIDLQELPATFCDLINLRELDLSNNQISELPDTFGGLEDLKKLNLEQNPLEVPLE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1687 300 Coils Coil 14 34 - -
Lele24g1687 300 SMART LRR_bac_2 211 230 - -
Lele24g1687 300 SMART LRR_bac_2 234 255 - -
Lele24g1687 300 SMART LRR_bac_2 154 173 - -
Lele24g1687 300 SMART LRR_bac_2 259 278 - -
Lele24g1687 300 SMART LRR_bac_2 131 150 - -
Lele24g1687 300 Pfam Leucine Rich repeats (2 copies) 213 253 IPR025875 -
Lele24g1687 300 Gene3D Ribonuclease Inhibitor 117 182 IPR032675 -
Lele24g1687 300 Pfam Leucine rich repeat 254 295 IPR001611 GO:0005515
Lele24g1687 300 Gene3D Ribonuclease Inhibitor 183 299 IPR032675 -
Lele24g1687 300 ProSiteProfiles Leucine-rich repeat profile. 261 282 IPR001611 GO:0005515
Lele24g1687 300 SUPERFAMILY L domain-like 124 297 - -
Lele24g1687 300 ProSiteProfiles Leucine-rich repeat profile. 133 154 IPR001611 GO:0005515
Lele24g1687 300 SMART LRR_typ_2 234 258 IPR003591 -
Lele24g1687 300 SMART LRR_typ_2 259 281 IPR003591 -
Lele24g1687 300 SMART LRR_typ_2 131 153 IPR003591 -
Lele24g1687 300 SMART LRR_typ_2 211 233 IPR003591 -
Lele24g1687 300 SMART LRR_typ_2 154 177 IPR003591 -
Lele24g1687 300 PANTHER - 123 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1687 Lele-ChrLele24 22236593 22237970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1687 123 295 Receptor kinase-like Gene Family AT5G27060 31.461 2.99e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1087 17 21307545 21312448 Lele24g1687 24 22236593 22237970 CCT
Lele18g0452 18 2644256 2645707 Lele24g1687 24 22236593 22237970 CCT
Lele19g0472 19 2681248 2686046 Lele24g1687 24 22236593 22237970 CCT
Lele20g0981 20 15846733 15848181 Lele24g1687 24 22236593 22237970 CCT
Lele24g1687 24 22236593 22237970 Lele24g1687 24 22236593 22237970 ECH
Lele21g1746 21 25249584 25251657 Lele24g1687 24 22236593 22237970 hybridization