LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele24g1670	ATGTCTATCACTTCTATACCTTCCTTCAAGACCCTAACAATGGCAGAATCACGCCTTCTCTCTCTGCCCTCTGTAATTTCCAACAAAACCAAGCACCCCTTCATCTCCATCCCGTCTAAACCTTTTAAGCTTCAGGCCTCTTGCTCCTATTCCTCCCTCTTTCTACCATCTCTGTCCCTCACTAGAAAAACCCACAATTTATCTATACTCACATTCGTAGCCCAGACTTCGGACTGGGCTCAACAGGACGAAGACAACACCGTCACCATAGATGAAGAGGAAAATCAAGACGTGGATGATGCAGAGGCTCGTCTTTCGGATTGGGAGGTTGATGGTGAAGGCGAAGGAATTGAGGGTAGCGAGGGCGAAGGAGAGAGTAATGAAGATGATGAATTTTTGAAGGACGGGGGCTTTTCAGAACCACCAGAAGATGCGAAACTTTTTGTCGGTAATTTGCCTTTTGATGTTGATAGTCAGAGATTAGCCATGCTTTTTGAGCAGGCCGGAACAGTGGAAATTGCGGAGGTTATTTATAATAGGAGCACTGACCAAAGTCGTGGGTTTGGATTTGTAACGATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTCGAAAAGTTCCACCGCTACGATCTAGATGGAAGACTGTTGACTGTCAACAAAGCTGCTCCAAGAGGAGCACAGCCTGAACGCCCACCACGGGTGTTTGAACCATCCTTTAGAGTCTACATAGGCAACTTGCCATGGGATGTTGATAATGGTCGCTTGGAGCAGATTTTTAGCGAACATGGTAAGGTTGTGAGTGCTCGGGTAGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAACAGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGACGGGAGGTCAATCAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGAGGTGGCTTTTGA	975	0.4667	MSITSIPSFKTLTMAESRLLSLPSVISNKTKHPFISIPSKPFKLQASCSYSSLFLPSLSLTRKTHNLSILTFVAQTSDWAQQDEDNTVTIDEEENQDVDDAEARLSDWEVDGEGEGIEGSEGEGESNEDDEFLKDGGFSEPPEDAKLFVGNLPFDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFHRYDLDGRLLTVNKAAPRGAQPERPPRVFEPSFRVYIGNLPWDVDNGRLEQIFSEHGKVVSARVVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRSIRVNVAEERPRRGGF	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele24g1670	324	PANTHER	OS02G0815200 PROTEIN	32	319	-	-
	Lele24g1670	324	MobiDBLite	consensus disorder prediction	112	130	-	-
	Lele24g1670	324	CDD	RRM_HP0827_like	146	223	-	-
	Lele24g1670	324	FunFam	31 kDa ribonucleoprotein, chloroplastic	74	228	-	-
	Lele24g1670	324	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	147	216	IPR000504	GO:0003723
	Lele24g1670	324	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	241	311	IPR000504	GO:0003723
	Lele24g1670	324	CDD	RRM_HP0827_like	240	316	-	-
	Lele24g1670	324	Gene3D	-	229	324	IPR012677	-
	Lele24g1670	324	MobiDBLite	consensus disorder prediction	88	137	-	-
	Lele24g1670	324	SUPERFAMILY	RNA-binding domain, RBD	230	322	IPR035979	GO:0003676
	Lele24g1670	324	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	239	317	IPR000504	GO:0003723
	Lele24g1670	324	SUPERFAMILY	RNA-binding domain, RBD	141	233	IPR035979	GO:0003676
	Lele24g1670	324	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	145	223	IPR000504	GO:0003723
	Lele24g1670	324	FunFam	31 kDa ribonucleoprotein, chloroplastic	229	323	-	-
	Lele24g1670	324	SMART	rrm1_1	146	219	IPR000504	GO:0003723
	Lele24g1670	324	SMART	rrm1_1	240	313	IPR000504	GO:0003723
	Lele24g1670	324	Gene3D	-	74	228	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele24g1670	Lele-ChrLele24	22138933	22141589	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele24g1670	147	321	Eukaryotic Initiation Factors Gene Family	AT3G16380	36.413	1.68e-22	96.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele23g0285	23	1952179	1954632	Lele24g1670	24	22138933	22141589	ECH
	Lele24g1670	24	22138933	22141589	Lele24g1670	24	22138933	22141589	ECH
	Lele21g1726	21	25114126	25116592	Lele24g1670	24	22138933	22141589	hybridization
	Lele22g1701	22	22459006	22461656	Lele24g1670	24	22138933	22141589	hybridization