Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1662 ATGGATGGGAGGCGGCATTCAGTTGATGTTCCTATTTCGAAAACTCTTATAGCGTTGAGGAGAGTCAGGTCATTGAGGGATCCATCTACAAATTCTATGAGCAAACTCTGTTCTTCCATTGATAATCTACACTGGGAAAACAGTTCGGGCAATGGGATTTCTCTGCGGTTCTTGGACGCTTCTCGCGCTTGTGATTCTGATGATAATGGTGCATTAAGGTCGAAGAATTTAAGTTGTAGCATGCGCAGAGAGCACGAGGCTGCTGATTTTGAATTGAACTGTGACCATTTCAACTCTAAACTGAAGTCTTGTCCCGAAGGGCAGCAGGATGAAGAGCTAGCGTACTCTAATTTGAATCAGGAAGGCAATTCCGGTATTAAGTCGGGAAGTGATGGCTGCTACAGCAACCATAGATGTAAGGACTTAGATATAGCATCTATTATGCCTCCTAGCAACGAGGCAACTTCAGGATCATCAAAGTTAGGGACAATTGATCATTCTATGTTGACTAGAACAACTTTATGCAAGAATCAAGTGAAATCATCCAAAGTTTTGGGCGAAATTGCAGGTCTTAGAGGTAGTCCATGCCTTTCAGTCGGTGAAGCTTTCTCAGCTTATAGTTCTTCGACGAATATGGATCAAGATGTAGATATTGTAGATGACAATCAGCAACAATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATGTATATTCTGATATAGAAGACCGTCCCCTGATATCCTGGCACACAGATGAGACAGCTCTTTATGGACATAAAAACACGAGACACATTGGTGGTGAAATCAGTCCAAATTTTGAAACTCCTAGAAGTTTATGCATGAAATTCAGGCCAAAATCTTTTAACGATTTGGTTGGACAAAATGTGGTAGCGAGGTCTCTTTTGGGTGCCATCTTTAAGGGAAGGGTGACTTCATTCTATCTCTTCCATGGTCCTCGTGGTACTGGCAAGACATCTGCTTCTAGGATTTTTGCTGCTGCCCTCAATTGTCTCTCCCTTGAGGAGGAAAAGCCATGTGGTCTGTGCAGAGAGTGTGTTTTGTTCTTTTCTGGTAGAAGTAAAGACGTTAAAGAAATTGATTCTGTGAGACTTAATCGTATTGACAAAGTCAAATCCCTTGTTAAGAATGCAAGCATGCCTCCAGTTTCTTCACGTTTTAAGATATTTATTGTTGATGAGTGCCAGTTGATCCTTGGGGAGACATGGGCAAGTCTTTATAATAGCCTAGAGAGCCTTTGTCAATATGTGGTTTTTATTATGATCACTCCAGACTTGGACAAACTTCCCCAAAGTGCAGTTTCCAGGGCTCAGAGGTATCACTTCCCTAAGATAAAAGATGCTGACATTGCAGGCAGATTGGAAAAAGTTTGCATAGAAGAAGGTCTTGATTTTGAACAGGATGCTTTGGACTTCATTGCTGCTAAATCCTGTGGTTCACTTAGGGATGCAGAAATCATGCTTGATCAGCTGAGCTTGCTTGGTAAAAAAGTCACAGTTTCCTTGGCCTATGAGCTTACTGGTATCATTTCTGATGATGAATTGCTTGAATTACTGGATCTGGCTTTGTCCTCTGACACTTCAAATACAGTTAAAAGAGCGCGAGAGTTAATGAGATCAAGGGTGGATCCTCTACAACTTATATCGCAGCTGGTAAATCTAATCATGGACATTCTTGCAGGAAAATGTGACGATGGTGGTTCTAAAGTCAGAATGAGGTTTTCTAGCAGATATAAATCTGAAGTGGACCTTCAAAAACTAAATCATGCATTGAGAATACTTTCTGAAACGGAGAAGCAACTACGAATTTCCAAGAATCAAACAACATGGTTCACAGTAGCTCTTCTACAGTTAAGCTCTGCAGAACATTCTTCCGTTGAAGCAAATGATACTAAATTGAGAGATGCATGCAATGGAGATGCTGATTTCTGCAGTACATCATCTACAGAGTATAGCCGGAAGCATCTTGCCTCTGCTCAGTATGATAACAAGTTGTTTAGATTAGGACAACAGGATCACACATTAAGTTCCATATGGCATAAAGCGACAGAGTCATGTGAATCTAACAGACTCAAGATTTTTCTTAGGAAGCAGGGGAAGTTGTCTTCGCTCTGTGTTAATCGCGATCTAGCAATTGCTGAGGTGGATTTCCAGCATCGCAACTATGTATGTAGGGCTGAGAAGTCATGGAAAATGATTGCCAGTTCCCTCCAGCTCATATTGGGTTGTAACATAGAGCTCAGGATCAATCTTGTGCCTTGTACTTCTGATTCTAAATACGCCAAGTTGAAGAGGTCATCTTTCAGTTTTTTTAGTTGTTCCCGTAGAATTCGTCGAAAAGCACTCTCAGATAATGAACAGGGAAGTAAACCAGATTACACTGATCACACCTCAAAGAAAGCCATGATGAAGGATAGAACTTTTACTTGTAGATCTGATTGTGGATCTCAGATGCGACAAGCTGAGCCTTATCATGGAATGGAGGTTGTGACAGCATTGAGAGATGGTGAAGGAAATTTACTGAGTTCAAGGAAGAGTTTGTTGAATAGTTCATGTCAAGAGACTTCAAGGACCTCAAGTTCTGGGTTTGATTCCTCTAAGGAAGAGGGATTTGGTTATGCACACCTAGTTTCATCAAACCCTGATTCAGACTATCAATCAAAATGTTTCCCTAGAACTTTCTGGATTCATAAGAAGAAGTTACGTTCTCCAGATCTATCTCAGTTGGATTTTGAGGGCACCCAACAACAGGAAGAATTTGTTTTACCTATCCCAAATTACTCCTGTTCCAAGACATATAGCTATGCTAGTGAACCATGTGTTTTCTCCACCAGCTCTAACAACTGTACCAAAGCCTTCCAAAATGAGAAAAGGTAG 2913 0.4092 MDGRRHSVDVPISKTLIALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFLDASRACDSDDNGALRSKNLSCSMRREHEAADFELNCDHFNSKLKSCPEGQQDEELAYSNLNQEGNSGIKSGSDGCYSNHRCKDLDIASIMPPSNEATSGSSKLGTIDHSMLTRTTLCKNQVKSSKVLGEIAGLRGSPCLSVGEAFSAYSSSTNMDQDVDIVDDNQQQCGISCCWSKSPRFRESNVYSDIEDRPLISWHTDETALYGHKNTRHIGGEISPNFETPRSLCMKFRPKSFNDLVGQNVVARSLLGAIFKGRVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEEEKPCGLCRECVLFFSGRSKDVKEIDSVRLNRIDKVKSLVKNASMPPVSSRFKIFIVDECQLILGETWASLYNSLESLCQYVVFIMITPDLDKLPQSAVSRAQRYHFPKIKDADIAGRLEKVCIEEGLDFEQDALDFIAAKSCGSLRDAEIMLDQLSLLGKKVTVSLAYELTGIISDDELLELLDLALSSDTSNTVKRARELMRSRVDPLQLISQLVNLIMDILAGKCDDGGSKVRMRFSSRYKSEVDLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSAEHSSVEANDTKLRDACNGDADFCSTSSTEYSRKHLASAQYDNKLFRLGQQDHTLSSIWHKATESCESNRLKIFLRKQGKLSSLCVNRDLAIAEVDFQHRNYVCRAEKSWKMIASSLQLILGCNIELRINLVPCTSDSKYAKLKRSSFSFFSCSRRIRRKALSDNEQGSKPDYTDHTSKKAMMKDRTFTCRSDCGSQMRQAEPYHGMEVVTALRDGEGNLLSSRKSLLNSSCQETSRTSSSGFDSSKEEGFGYAHLVSSNPDSDYQSKCFPRTFWIHKKKLRSPDLSQLDFEGTQQQEEFVLPIPNYSCSKTYSYASEPCVFSTSSNNCTKAFQNEKR 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1662 970 Gene3D - 458 520 - -
Lele24g1662 970 SUPERFAMILY post-AAA+ oligomerization domain-like 527 630 IPR008921 GO:0003677|GO:0006260
Lele24g1662 970 CDD HLD_clamp_pol_III_gamma_tau 457 520 IPR045085 -
Lele24g1662 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 507 IPR027417 -
Lele24g1662 970 CDD AAA 298 448 - -
Lele24g1662 970 FunFam DNA polymerase III subunit gamma/tau 458 520 - -
Lele24g1662 970 FunFam Protein STICHEL-like 1 isoform C 521 634 - -
Lele24g1662 970 Gene3D - 521 633 - -
Lele24g1662 970 Pfam DNA polymerase III, delta subunit 300 457 - -
Lele24g1662 970 SMART AAA_5 316 458 IPR003593 -
Lele24g1662 970 Gene3D - 278 455 IPR027417 -
Lele24g1662 970 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 285 690 - -
Lele24g1662 970 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 284 630 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1662 Lele-ChrLele24 22095186 22098857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1662 275 569 Core DNA Replication Machinery Family AT1G21690 21.895 3.87e-14 73.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1662 24 22095186 22098857 Lele24g1662 24 22095186 22098857 ECH
Lele21g1718 21 25059954 25064931 Lele24g1662 24 22095186 22098857 hybridization
Lele22g1695 22 22399263 22402912 Lele24g1662 24 22095186 22098857 hybridization