Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1655 ATGGCGGGTTCGGCAGCTCTGGCGCCAGAGCCAAACTCAGAGGTATTTTCATGGTTAAAATCTCTTCCTCTAGCTCCAGAGTACCGCCCTACCTTGGCTGAGTTCCAAGATCCGATATCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATATGCAAAATTGTTCCCCCCGTGCCACCTTCTTCGAAAAAGACAGCAATTGCAAATCTTAATCGCTCGTTGGCGGCACGAGCTGCTTCTTCGGACTCTTCTAATCCGAAATCCCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGGCCGGCGCAGCGTCCTGTGTGGCAGAGTGGGGAATACTACAGTTTTCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTATCTAAAGAAATGGGCTAGGAAAGGTGGGCTCTCGCCTCTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGATATGCCTGGCTCGGCTTTTGTTCCCGTGAATGGGAGAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACGGCATGGAACATGAGGGGGGTGTCACGGGCAAATAGCTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCAGGTGTTACATCACCGATGGTGTACGTCGCTATGCTATTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACCTGCATAGCTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGCGTGCCGCGGGATGCAGCTGTGGCATTTGAGGAAGTGGTCAGAGTTCATGGTTATGGAGGAGAAATAAATCCTCTTGGTAAGTACCTTAAGGTGGCCGCTAAATCAAAGCAAGCATCCCTGTTTCTCGGTTCTGTGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGAGAGGCAGCCAACATTGCGACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTAGGAGGGCATCAATAAATTACCCGCCCATGGTCTCACATTTCCAGTTACTTTATGATCTTGCCCTGGCTTTGCGATCGAGAATTCCTGGGGACATCAGTGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGCCTTGATTCATGGTCTTGGTAAAGGATCTACTATAGTACTTCTTCCTCGGAGCTCTTTAGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTCCCAGCAACTGAAGGTGAACCCTGGGTATTCTCCCAGTGCTGGCAATTCTGAGGGAGTGAATTCCTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGAAGAACCACACAAGTGAAAGGATTTTGTTCAGTAAAAGAGAAGTTTGCTTCTTTGTGTGAAAGGAACAGAGTCTCATTAAGTGTAAATGATAACTTATGCTCTTCAAGTTCTGTGCCACTTCAAAGAGACACTGAAAGAGAGACAAGCCAAGGGGATGGGTTGTCAGACCAGAGGCTATTTTCATGTGTCACTTGTGGCATATTAAGCTTTGCTTGTGTTGCTATTGTTCAGCCTAGGGAACCAGCAGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAAGCATCAATAAGTTTACACATGCCCATGGAGATGCAACTACTCCTGAGAAAAACACCTTTGCAGGTTCTTTCCAGGACCCTCCCAGTAGGAATCATGTAACGCAGTTCTCATTTCCAATCTTCCTTGACAAAGATGCGGAGAAAACTACTTGCTTGTTTCTGTTTCTTCATGCAGGATGGAAGGTCAAAACGGCCCCAGACTATGATCTTCCTGATCAATCTGTAGGATACCAGGTACAGGCGGAAGATCAATCACATGAGGTAGCTTTACGTAATAAAGGACAAAAAGAAACATCAGCCCTTGGCTTATTGGCATCAACATATGGAAATTCGTCTGATTCAGAGGAAGACCAGGGTGACCCGGATATTGCAGTTCGTGATAATGATTCTAATGTTATGAACAGTCCATCAGGTAGTATATCTCAGAATCTGTCTAGCTTGCCTTCTCATTTCCAAGATTGCAATGCAAGTGCAGTCGGGGTTCATGTTGATTATGAGCAAAAAGCAGACTCAGAAGGTTGTGATGCCACTTCAGGGACCGTGTTGAAGAATACGAGCTGTACCTTAAATTATTCTCAAGATGGTCGTGAGGCTGAAACATCAATGCTTCGTAACTCTGGTTGTCCCATTGATAATAGTAGTGCTTCATTGTTGCCACATTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCTGAAGTGGAGCAGCAGCTTCACCCGATAGGAGGAGCACACATATTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCAAGAAATGTGGCAGAAGAACTGGGTATTGATGGCATATGGAAGGATCTTGATTACAGAAATGCCACCCCGGAAGATGAGGAGAGGATCCAGTCGGCACTGGATAGTGAGGAGGCTATTCCTGGAAATGCAGATTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAACCTTAGCCGCTCTCCTCTCTACAGTAAGCAGATGCCTTATAATTCTGTCATATACTGTGCATTTGGCCGTAGTACTCCAGCAAACTCAACCACAGAACCCAAGGTTTACCAAAGAAGGTCCAGCAAGCAGAAAAAGGTGGTTGCTGGAAAATGGTGCGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGGGATTCTGAGGATGATGATGAGAAAATCTTACATGAGTGGTCGTTGCCTGACAAGAAAATTGAGAGAGAATATGTTTCGCTGCTAGAAAATTTCACTAAGAAAAGGAAAATGACTGTGGAGGGTAGAAAAGCCTGGAAAGCCAGTTTTGCTGAGGGAGAATATGTTTCAGATAATTCAATTGAAGAGAAATACAATCCGCAGCAAAGGACATATTCTAGAAGCAAGCAAGCCATATATTTTGACAAAGATGATGCAGCATCAGAAGAGGATTATTCTCCTCTGCAGCAATATAGAAAACCTACAAGAAAGCAAGCCAAATACAGCGAAAGTGATCAAGTTTCAGATGATTCAATGGATGATAATGCTAACATGCAGCATGGAAGGAATTTAAAATTCGAAGAACCTAAATTTATTGACAGTGATGTTGTCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTAGCAACAAACGAATTGAAGACTCTGAAAGAGATGGAATTTCAGAGGATTCGATGGGTGGTAGTTCTCTTAAGCGGCGGAGGAAGACTTGTAAAAGCAAGCCAGCGAAATATTTTACTAAAGATGTAACTTCTGATGACCAAATGGAGGATCATTTTCGGAAGCAGCAAAGAAGGATTCCTAAAAGCAGACAAGCCAAATACCTTGATGCAGAAAATATCATGGTATCTGATGACCAAGTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGCAGGCGAGCCAAATTCCTCGCTGGAGAGGATATTACATCTGGGGACCAACTGGAGGACCATTCTGGCAAGTGTCATAGGAGGATTCGTAAAGGCAGACAAGGCAAATGCCTCGTTGTGGAAGATATAATGTCTGATGACCAATTAGAGGATCACTTTCAGAAGCCACCTGGTACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTAAGAGGAAGCCAGTTAAAAGCATGAGTGAAGAAGACATAAACTCTGATGATCAAATGGAGGATTCGTCTCATCAGCAGCGAAGGAGGGTTCTTCGAAGCCAGCAATCTAAATTAGAGGCGCAACAAGAAATGAAACAATCTAACTCTTGCCATGTGAAAGGACAGACATCCCGGCCTCTAAAACGGGGTGCTCAGCTGCTAGTAAAACCAAAGACTTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAATTCATCCTAATAACTTCAGAGATTTTAACTTATGTTCAGAAGAGGAGGAGGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGTACCAAAAATTGAGGGGTCTGAAGCAAAACCGAAAGAAAAGGTAACCCAAAGGAAGAAGGTGAATAATTCTACAGCTTCCAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATATGATTGTGATATTGATGGGTGCACTATGAGTTTTAGCTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGCGGGAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCATGAGGATGACCGCCCTCTGAGGTGTCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTTCATACCGGGGCTCGTCCATACGTTTGTGCTGAGCCAGGGTGTGGACAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACCGGCCATTCAGCAAAGAAGAGTCGTTAA 4758 0.4418 MAGSAALAPEPNSEVFSWLKSLPLAPEYRPTLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAIANLNRSLAARAASSDSSNPKSQPTFTTRQQQIGFCPRKQRPAQRPVWQSGEYYSFQEFEAKAKAFEKNYLKKWARKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGRKYREAGEGMTLGETAWNMRGVSRANSSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLGKYLKVAAKSKQASLFLGSVLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALRSRIPGDISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNALIHGLGKGSTIVLLPRSSLDISVCSKLRVGSQQLKVNPGYSPSAGNSEGVNSSKGFVSDDLVFRRTTQVKGFCSVKEKFASLCERNRVSLSVNDNLCSSSSVPLQRDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSINKFTHAHGDATTPEKNTFAGSFQDPPSRNHVTQFSFPIFLDKDAEKTTCLFLFLHAGWKVKTAPDYDLPDQSVGYQVQAEDQSHEVALRNKGQKETSALGLLASTYGNSSDSEEDQGDPDIAVRDNDSNVMNSPSGSISQNLSSLPSHFQDCNASAVGVHVDYEQKADSEGCDATSGTVLKNTSCTLNYSQDGREAETSMLRNSGCPIDNSSASLLPHSDEDSSRLHVFCLEHAAEVEQQLHPIGGAHILLLCHPDYPKVEAEARNVAEELGIDGIWKDLDYRNATPEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYCAFGRSTPANSTTEPKVYQRRSSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKILHEWSLPDKKIEREYVSLLENFTKKRKMTVEGRKAWKASFAEGEYVSDNSIEEKYNPQQRTYSRSKQAIYFDKDDAASEEDYSPLQQYRKPTRKQAKYSESDQVSDDSMDDNANMQHGRNLKFEEPKFIDSDVVSDDTMGYDSDSQLRRELSNKRIEDSERDGISEDSMGGSSLKRRRKTCKSKPAKYFTKDVTSDDQMEDHFRKQQRRIPKSRQAKYLDAENIMVSDDQVEHRIHKQQRSKGRRAKFLAGEDITSGDQLEDHSGKCHRRIRKGRQGKCLVVEDIMSDDQLEDHFQKPPGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPKRKPVKSMSEEDINSDDQMEDSSHQQRRRVLRSQQSKLEAQQEMKQSNSCHVKGQTSRPLKRGAQLLVKPKTSQKMKQPPRVQKIHPNNFRDFNLCSEEEEEGGPSTRLRKRVPKIEGSEAKPKEKVTQRKKVNNSTASKVSKTKDEEAEYDCDIDGCTMSFSSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1655 1585 FunFam Probable lysine-specific demethylase ELF6 1550 1579 - -
Lele24g1655 1585 Gene3D Classic Zinc Finger 1443 1493 - -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1416 1462 - -
Lele24g1655 1585 Pfam JmjC domain, hydroxylase 229 340 IPR003347 -
Lele24g1655 1585 ProSiteProfiles JmjC domain profile. 199 358 IPR003347 -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1131 1154 - -
Lele24g1655 1585 ProSiteProfiles Zinc finger C2H2 type domain profile. 1493 1522 IPR013087 -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1106 1121 - -
Lele24g1655 1585 Gene3D Cupin 18 362 - -
Lele24g1655 1585 ProSiteProfiles Zinc finger C2H2 type domain profile. 1553 1584 IPR013087 -
Lele24g1655 1585 ProSitePatterns Zinc finger C2H2 type domain signature. 1555 1579 IPR013087 -
Lele24g1655 1585 SUPERFAMILY beta-beta-alpha zinc fingers 1493 1529 IPR036236 -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1354 1374 - -
Lele24g1655 1585 Pfam jmjN domain 26 59 IPR003349 -
Lele24g1655 1585 ProSitePatterns Zinc finger C2H2 type domain signature. 1495 1517 IPR013087 -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1416 1450 - -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1279 1384 - -
Lele24g1655 1585 Gene3D Classic Zinc Finger 1494 1577 - -
Lele24g1655 1585 SUPERFAMILY Clavaminate synthase-like 191 372 - -
Lele24g1655 1585 SMART c2h2final6 1470 1492 IPR013087 -
Lele24g1655 1585 SMART c2h2final6 1493 1517 IPR013087 -
Lele24g1655 1585 SMART c2h2final6 1523 1547 IPR013087 -
Lele24g1655 1585 SMART c2h2final6 1553 1579 IPR013087 -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1063 1173 - -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 1322 1353 - -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 81 112 - -
Lele24g1655 1585 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1519 - -
Lele24g1655 1585 SUPERFAMILY beta-beta-alpha zinc fingers 1533 1577 IPR036236 -
Lele24g1655 1585 SMART JmjN_1 24 65 IPR003349 -
Lele24g1655 1585 SMART cupin_9 196 358 IPR003347 -
Lele24g1655 1585 FunFam Probable lysine-specific demethylase ELF6 1520 1549 - -
Lele24g1655 1585 ProSitePatterns Zinc finger C2H2 type domain signature. 1525 1547 IPR013087 -
Lele24g1655 1585 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Lele24g1655 1585 ProSiteProfiles Zinc finger C2H2 type domain profile. 1523 1552 IPR013087 -
Lele24g1655 1585 MobiDBLite consensus disorder prediction 81 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1655 Lele-ChrLele24 22039201 22047168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1655 1128 1584 C2H2 Transcription Factor Family AT3G48430 37.475 1.03e-71 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele24g1655 JmjC 1.2e-28 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1655 24 22039201 22047168 Lele24g1655 24 22039201 22047168 ECH
Lele21g1712 21 25016207 25026529 Lele24g1655 24 22039201 22047168 hybridization
Lele22g1689 22 22359180 22368639 Lele24g1655 24 22039201 22047168 hybridization