Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1654 ATGGCAATTCGATGCGGTTACACTAACAAATACACCGGTTTGAAATTGAAATGTGGGGGGAGAATGGAGTCTGCTGAACCCGAATCAACTGCAGCTTCGAATTCCAACGAAAACCCAGAATTGGGCTTTCGCTCGGCCTCATCTTTGCCTAGTTCTGATCACGCTTCGGAAACCTCAGATCTTAATCATCAGGCTGAGGTCGACGCCCTTAATGGGGAGTTTAGAAACAAGTTGATTTTGAAGGATAAGGATGAAGAGGTAGAGACTGTGAACAAGGATTATGAATTTGATGGTAGTGCGGAAGTGTCTGATAAACACGGTGCTGAGGAATCTTATGAGGTAGATGGGTGGGGTGAATATAACGATAATTGGAATGAAAATGAGGACAACAATTGGACTACGAATGTGAACGAGAACGAGAATGATGAGGATGGTGGAGATTATGATATTGCTGTCCATGAAGTGGAGATAAAGGAAGAGAGAAGCGGTGATAGCAACCACCAGTACCCAGTGAGGCCCGAAGCAGAAGATTGTTCATTCTATCTGAAGACTGGATCTTGCAAATTCGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCAGGCCTGTAAAGAGAAGTCAGGAGAGAGAGAAGAATCAACTGATAGATTGGCGCAGGCAGAATGCAAGTATTATCTATCGTCAGGAGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCATTCAAAAGGAAAATGTTCAGTAGCGACAGTTCTAGAGCTTAATTTTCTTGGTCTGCCTATTCGTCTGGGGGAGAAAGAGTGCCCTTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTTAATCATCCAGATCCTACAGCTGTCGGAGGAGGTGATCTTCCTGCAAGATATGGTAATGGTGGGTCAATATCATTACAAGGTGTCTCACAGCCATCTGTACCCTGGTCTTCTCCAAGAATACTAAATGAAACTGCGGCTTTTATGCCAATGATGTTGTCACCTAGTCAAGGCGTTTCTCCCGGAAGTTCTGAATGGAATGTGTATCAGCCACCTGTCTACCTACCTGACCTACCTGAGGGGAGCATTCGCCCACCGGCATATGTTATGAACAACCCAGTGATTGAGAAAAATATTTATACGCATCATCAAAGGAAGATGCAGGTTGAAGAGTTTCCTGAAAGGCCCGGGGAGCCTGAATGCAGTTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGATTACAAAGTTACCCTCTTCTACATGCACCCTGAGTGACAAGGGTCTACCTTTGAGACCTGACCAGAATGTGTGCACGCATTACAGTCGCTATGGAATCTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCATCGCCCTCTACAGGGTCTCCACTTGATCAGCAATCGTCGTACTCAAACTCTCCTAGACTTGAAGTGGGTGAAAATTGA 1518 0.4374 MAIRCGYTNKYTGLKLKCGGRMESAEPESTAASNSNENPELGFRSASSLPSSDHASETSDLNHQAEVDALNGEFRNKLILKDKDEEVETVNKDYEFDGSAEVSDKHGAEESYEVDGWGEYNDNWNENEDNNWTTNVNENENDEDGGDYDIAVHEVEIKEERSGDSNHQYPVRPEAEDCSFYLKTGSCKFGFNCKFNHPVNRRKNQACKEKSGEREESTDRLAQAECKYYLSSGGCKFGKACKYNHSKGKCSVATVLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGGDLPARYGNGGSISLQGVSQPSVPWSSPRILNETAAFMPMMLSPSQGVSPGSSEWNVYQPPVYLPDLPEGSIRPPAYVMNNPVIEKNIYTHHQRKMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPRNRITKLPSSTCTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPSPSTGSPLDQQSSYSNSPRLEVGEN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1654 505 Gene3D - 135 209 - -
Lele24g1654 505 ProSiteProfiles Zinc finger C3H1-type profile. 451 479 IPR000571 GO:0046872
Lele24g1654 505 SUPERFAMILY CCCH zinc finger 171 201 IPR036855 GO:0046872
Lele24g1654 505 Coils Coil 207 227 - -
Lele24g1654 505 MobiDBLite consensus disorder prediction 27 65 - -
Lele24g1654 505 MobiDBLite consensus disorder prediction 479 505 - -
Lele24g1654 505 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872
Lele24g1654 505 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Lele24g1654 505 SMART c3hfinal6 403 430 IPR000571 GO:0046872
Lele24g1654 505 SMART c3hfinal6 172 199 IPR000571 GO:0046872
Lele24g1654 505 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Lele24g1654 505 SMART c3hfinal6 220 247 IPR000571 GO:0046872
Lele24g1654 505 SMART c3hfinal6 451 478 IPR000571 GO:0046872
Lele24g1654 505 MobiDBLite consensus disorder prediction 18 67 - -
Lele24g1654 505 ProSiteProfiles Zinc finger C3H1-type profile. 403 431 IPR000571 GO:0046872
Lele24g1654 505 SUPERFAMILY CCCH zinc finger 267 293 IPR036855 GO:0046872
Lele24g1654 505 PANTHER PROTEIN PHOSPHATASE RELATED 58 486 - -
Lele24g1654 505 Gene3D - 387 443 - -
Lele24g1654 505 Gene3D - 451 498 - -
Lele24g1654 505 Gene3D - 216 298 - -
Lele24g1654 505 ProSiteProfiles Zinc finger C3H1-type profile. 220 248 IPR000571 GO:0046872
Lele24g1654 505 SUPERFAMILY CCCH zinc finger 408 433 IPR036855 GO:0046872
Lele24g1654 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 292 IPR000571 GO:0046872
Lele24g1654 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 454 477 IPR000571 GO:0046872
Lele24g1654 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 224 247 IPR000571 GO:0046872
Lele24g1654 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 198 IPR000571 GO:0046872
Lele24g1654 505 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 405 430 IPR000571 GO:0046872
Lele24g1654 505 SUPERFAMILY CCCH zinc finger 224 249 IPR036855 GO:0046872
Lele24g1654 505 SUPERFAMILY CCCH zinc finger 449 477 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1654 Lele-ChrLele24 22033969 22037555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1654 169 505 C2H2 Transcription Factor Family AT3G02830 39.130 1.55e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele24g1654 zf-CCCH 1.9e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0300 23 2059678 2062928 Lele24g1654 24 22033969 22037555 ECH
Lele24g1654 24 22033969 22037555 Lele24g1654 24 22033969 22037555 ECH
Lele21g1711 21 25010505 25013734 Lele24g1654 24 22033969 22037555 hybridization
Lele22g1688 22 22353706 22356994 Lele24g1654 24 22033969 22037555 hybridization