Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1632 ATGGCTAGCTGTAGTTCTCTTTCATTGTGTACGTACAGCCTTTATCGTCACCCGAACCCAAAAAGACGTCCCATTTTGTGCTCGGTTGGCTCTTCTTCGCTCGTAGGCATTGATGGATCTAAAGTACCCCGCAAAAGATCAAGAAAAATCGAAGGTCCTGGAAAAAGCATGGAAGACTCTGTTCAACGCAAGATGGAGCAATTTTATGAAGGATCTAATGGGCCACCCCTGCGAGTTCTTCCCATTGGCGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGGAACCATGATCGTTATATCCTTATTGATGCTGGTGTCATGTTCCCAGACTATGATGAGCTTGGAGTCCAAAAGATTATACCTGATACAACATTTATAAGAAAATGGAGGCACAAAATTGAAGCAGTTGTTGTAACGCATGGTCATGAAGATCATATCGGTGCTTTGCCTTGGGTCATACCAGCATTGGATACCCATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATTAGGAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCAAGACTCAAAGTATTTCGAACAAGGAAGAAATTTATGGCCGGGCCATTTGAAATAGAGCCTATCAGGGTGACCCATTCTATCCCTGATTGTTGTGGATTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCATACTGGGGACTGGAAGATAGATGAATCACCACTAGATGGTAAAGTTTTTGACCGTGAAGTTTTGGAGGAACTCTCTAAGGAAGGAGTAACATTAATGATGAGTGATTCAACAAACATACTCTCACCTGGAAGAACAATTAGTGAATCCTCTGTGGCAGATGCACTGTTAAGGCATATTTCTGCTGCTAAAGGAAGGGTTATTACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCAGCTGATTTAACTGGTAGAAAAATGGTGTTTGTTGGCATGTCTTTACGGACATATCTAGATGCAGCTTGGAAGGATGGAAAGGCACCATTTGATCCATCCACCCTGGTGAAAGTGGAGGATATTGATGCTTATGCTCCTAAGGATCTGCTTATTGTAACAACTGGATCTCAGGCAGAACCTCGTGCTGCCTTGAATCTTGCATCATATGGTGGTAGTCATTCTTTCAAACTGAACAAGGAAGATATAATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGAAAATGATGAACCGCATATCAGAGATTGGATCATCAATAGTAATGGGGAAGAATGAGGGGCTGCACACATCCGGTCATGCGTACCGTGGAGAATTGGAGGAAGTACTTAGAATAGTGAAACCGCAACATTTTCTTCCGATACATGGAGAACTCTTGTTCCTAAAGGAGCATGAATTACTTGGAAAGTCAACTGGCATTCGACACACTGCTGTTATTAAGAATGGAGAGATGCTTGGCGTTTCACACTTAAGAAACAGAAGAGTCCTTTCCAATGGCTTTGTTTCCCTTGGAAAAGAGAATTTACAGTTGAAGTACAGTGATGGGGACAAAGCATTTGGTACATCAAGCGAACTTTTCGTTGATGAAAGATTAAGAATTGCTTTAGATGGAATTATTGTGGTCAGCATGGAAATATTTCGCCCTGAAAATAGTGAGAGTCATGTTGAAAACACCTTAAAAGGGAAGATAAGAATTACCACAAGATGCCTGTGGCTTGACAAAGGAAAGCTGTTGGATGCGCTCCATAAAGCTGCTCATGCTGCACTTTCAAGTTGCCCGGTGAACTGTCCATTGGCTCACATGGAAAGAACTGTATCTGAGTTATTGAGGAAGTTGGTGAGGAAGTATAGTGGCAAAAGACCAGAAGTTATTGCTATTGCTATTGAAAACCCTGCCTCTGTTCTTGCTGATGAGGTAAAAGCAAAGCTGTCAGGAAAATCTCATATGGGTCTTGGGACGCCATCATTCAGAAAAGCTGTGTATGGACTTAAAGAGGAAAAGATGTCCAGTAAAATGCCAATAAAAGGAGATGATGGTACTGATGATGAAGGACTCCTACCTGAGGAAGACATCCCTACTCCAAGTGGAGCTGAGGGTGATTTCCCTGATTCAGAGGCTTCAGATGAATTTTGGAAATCATTCATCACACCTTCAACCGTGGAAAAGTCCATCAAGACTAACAATGGTTATATTCCACGAAAGCAGCAAGAGTCCCAGCTGATAAAAGATGATTCTACAGGCTCTGAAGAAGGCGAATCTGAATCCAAGCCTTCAAAAACAGTGAAGAGAAATAAATGGAAACCTGAGGAAGTGAATAAGCTGATCGATATGCGTGGGGAGCTGAACGATAGATTTCAAGTTGTGAAGGGAAGAATGATCCTGTGGGAGGAGATATCTCAAAAGTTGTTGGCTGATGGTATCAAAAGAAGTCCAGGGCAATGTAAATCTCTATGGACATCTTTGATACAAAAATATGAGGAGATCAAGAATGAGAAGAAGAGCAAGAAAAGCTGGCCATATCTGGAGGACATGGACAGGATATTGTCGGGCGCTAACAGCAAAATGAGCGAGAAATTGTTTTCAGTCATGAAGTTTGATACCAGTGGTCTTGAATCGTTTCCTACTCAAGTTCAGCCCCTCGATGGCATTGCTGGAGACTTTTGGGCTGCCCCAGCATTTGAGCTCCCTAAATCAACTGATGTTAGTGCTTATCATTAG 2736 0.4203 MASCSSLSLCTYSLYRHPNPKRRPILCSVGSSSLVGIDGSKVPRKRSRKIEGPGKSMEDSVQRKMEQFYEGSNGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWRHKIEAVVVTHGHEDHIGALPWVIPALDTHTPIFASSFTMELIRKRLKEHGIFVPSRLKVFRTRKKFMAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDESPLDGKVFDREVLEELSKEGVTLMMSDSTNILSPGRTISESSVADALLRHISAAKGRVITTQFASNIHRLGSVKAAADLTGRKMVFVGMSLRTYLDAAWKDGKAPFDPSTLVKVEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGGSHSFKLNKEDIILYSAKVIPGNESRVMKMMNRISEIGSSIVMGKNEGLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFVSLGKENLQLKYSDGDKAFGTSSELFVDERLRIALDGIIVVSMEIFRPENSESHVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLRKLVRKYSGKRPEVIAIAIENPASVLADEVKAKLSGKSHMGLGTPSFRKAVYGLKEEKMSSKMPIKGDDGTDDEGLLPEEDIPTPSGAEGDFPDSEASDEFWKSFITPSTVEKSIKTNNGYIPRKQQESQLIKDDSTGSEEGESESKPSKTVKRNKWKPEEVNKLIDMRGELNDRFQVVKGRMILWEEISQKLLADGIKRSPGQCKSLWTSLIQKYEEIKNEKKSKKSWPYLEDMDRILSGANSKMSEKLFSVMKFDTSGLESFPTQVQPLDGIAGDFWAAPAFELPKSTDVSAYH 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1632 911 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 434 471 IPR011108 -
Lele24g1632 911 MobiDBLite consensus disorder prediction 38 58 - -
Lele24g1632 911 MobiDBLite consensus disorder prediction 41 58 - -
Lele24g1632 911 Pfam Beta-lactamase superfamily domain 100 236 IPR001279 -
Lele24g1632 911 Pfam Myb/SANT-like DNA-binding domain 769 853 IPR044822 -
Lele24g1632 911 Gene3D - 772 833 - -
Lele24g1632 911 MobiDBLite consensus disorder prediction 732 770 - -
Lele24g1632 911 Gene3D - 278 428 IPR042173 -
Lele24g1632 911 SMART Lactamase_B_5a 89 286 IPR001279 -
Lele24g1632 911 PANTHER RIBONUCLEASE J 1 859 - -
Lele24g1632 911 MobiDBLite consensus disorder prediction 743 770 - -
Lele24g1632 911 CDD GT1 770 835 - -
Lele24g1632 911 Gene3D - 81 493 IPR036866 -
Lele24g1632 911 SMART sant 768 830 IPR001005 -
Lele24g1632 911 CDD RNaseJ_MBL-fold 80 491 - -
Lele24g1632 911 ProSiteProfiles Myb-like domain profile. 764 828 IPR001005 -
Lele24g1632 911 SUPERFAMILY Metallo-hydrolase/oxidoreductase 77 491 IPR036866 -
Lele24g1632 911 MobiDBLite consensus disorder prediction 675 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1632 Lele-ChrLele24 21890824 21899754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1632 732 862 Trihelix Transcription Factor Family AT3G25990 29.771 1.08e-10 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele24g1632 Lactamase_B_2 1.5e-10 CL0381