Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1578 ATGGCATCATCAGAGGTATCGATAAAGGGGAATGGGGTGAACGGGAAGGGGGAAGGCTTTTCTTCTGGTTATAACAACCACGACGATACTAAGAACGGTACAGAGGGTCAAAATGCTACTTCATTGACCGGGAAAGAAGCAGAAGCTGCGCTTTACAGAGAGCTATGGCATGCCTGTGCTGGTCCTCTTGTTACAGTTCCCCGGGAAGGAGATAGGGTCTTCTATTTCCCCCAAGGACATATCGAGCAGGTTGAGGCGTCCACCAATCAGGTGGCGGACCAGCATATGCCCGTCTACGATCTCCCTTCCAAAATTTTGTGTCGGGTGATCAACGTGTTGCTGAAGGCCGAGCCAGACACTGACGAGGTGTTTGCCCAGGTCACATTGGTTCCTGAGACCAGTCAAGATGAAAACGCCGTGGAGAAAGAGCCTCCTCCTCCGCCGCCACCTCGAATTCACGTGCATTCTTTCTGTAAAACTCTGACCGCATCGGATACAAGTACTCATGGTGGCTTTTCGGTTCTTAGACGACATGCTGATGAATGCCTACCTTCATTGGACATGTCTAAGCAGCCGCCTACCCAGGAGTTAGTGGCAAAGGATCTGCATGGAAATGAGTGGCGATTCAGACATATCTTCCGTGGTCAACCACGTAGACACTTACTCCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTCGTTGCTGGGGATGCCTTTATCTTTCTTAGGGGCGAGAACGGGGAGCTTCGTGTTGGTGTTAGGCGGGCAATGAGACAGCAGGGTAATGTTCCATCTTCAGTGATCTCCTGTCATAGCATGCATCTTGGTGTCCTTGCAACCGCTTGGCATGCCATCTCAACCGGCACCATGTTCACTGTTTATTACAAGCCCAGGACAAGTCCGGCTGAGTTTATTGTTCCATATGAACAATATATGGAGTCTCTAAAAAATAACTACACAATAGGGATGCGATTCAAAATGAGGTTTGAAGGCGAGGAGGCTCCAGAGCAAAGGTTTACTGGTACCGTTGTTGGAATGGAAGATGCTGATCCGAACAGGTGGCAAAATTCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAATATACCTCGCCCTGAAAGAGTTTCCCCTTGGAAAATAGAGCCTGCTGTTGCTCCTCCAGCTTTGAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGTACTAATGTGATTCCATTATCCCCTGACTCCTCTGTTCTCACTCGAGAAGCCTCATCTAAAGTAAGTAAAGACCCTTCGCTGGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATACTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCTGTTACTGCAGAGAAGTCTGTTGTGTGGCTTCCTGCAGTAGATGATGAAAAGATTGATATGGTTTCCACCTCAAGAAGGTATGGGTCAGAGAGTTGGATGTCAATGGGGAGGCATGAGCCAACATACTCAGATCTACTATCAGGTTTTGGAGCCAGTGGAGATTCTTTTCGTCCCCCCTTGGCTGATCAGACTGGCCCTCTGGCTAGTCCTGCTAAAAAGCATTCGTTGGACCAGGAAGGGAGGTTTAATGTGATGGCCAATCCATGGCCTGTGGGGCCTTCGGGTCTGTCTCTAAACCTCCTTGACTCAAATGTCAAGAGTTCTGTGAATGGTGGTGATGTAACATATCAAACCCCGGGGAATGTGAGGTATGGTGCATTTGGTGACTACCCTGTTCTCCATGGTCATAAAATCCAGCAGTTACATGGGAATTCGTTGATGCCACCACCATCTACAACACAATATGAGAGTTCTCGTTCAAGAGAGTTGATGTCAAAACCAGTATCAACCCAAACAAGTGAGCCTATCAAGCCAAAAGATGGTGATTACAAGCTCTTTGGCTTCTCACTTATCAGTGGCTCTGTTACACCAGAGCCATCTGTATCCCAAAGAAATGTGACTAGCGAGTCACCAGGTTACCTGCATCCTGCATCTTACAAACCTCATGATAGTGATCATAAAGCAGAACAATTGGGGGCCTCCAAACCAGCTGCTGTAGCTGCTGTTGATGACCCAGAGAAGTCGTTGCAAGCTTCTCAGACACATCTGAAAGAGGCTCAAGCCAAATTACCAAGTGGTTCTGCTAGGAGTTGCACTAAAGTACACAAGAAGGGAATTGCACTTGGTAGGTCAGTGGACCTCACAAAGTTTAGCAACTATGAAGAATTAGTTGTCGAACTGGATCAGCTGTTTGAATTTGGTGGTGAATTAATGTCTCCTAAAAAGGATTGGCTTATTGTCTATACTGATGATGAGGGTGACATGATGCTTGTTGGGGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTATCCCAAAGAGGAGATTCAAAAAATGAGCCCAGGTACACTAAGCTCAAGGAATGAAGAGAATCAGTCAGCTAGTGAAGGTGCCGACGCTAAAGTTGAATGTCAGTCGCATCATCCAGCTTCGCTGCCTGATAATTAA 2559 0.4728 MASSEVSIKGNGVNGKGEGFSSGYNNHDDTKNGTEGQNATSLTGKEAEAALYRELWHACAGPLVTVPREGDRVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVLLKAEPDTDEVFAQVTLVPETSQDENAVEKEPPPPPPPRIHVHSFCKTLTASDTSTHGGFSVLRRHADECLPSLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAISTGTMFTVYYKPRTSPAEFIVPYEQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTVVGMEDADPNRWQNSKWRCLKVRWDETSNIPRPERVSPWKIEPAVAPPALNPLPMPRPKRPRTNVIPLSPDSSVLTREASSKVSKDPSLASGFPRVLQGQEYSTLRGNFAESNESVTAEKSVVWLPAVDDEKIDMVSTSRRYGSESWMSMGRHEPTYSDLLSGFGASGDSFRPPLADQTGPLASPAKKHSLDQEGRFNVMANPWPVGPSGLSLNLLDSNVKSSVNGGDVTYQTPGNVRYGAFGDYPVLHGHKIQQLHGNSLMPPPSTTQYESSRSRELMSKPVSTQTSEPIKPKDGDYKLFGFSLISGSVTPEPSVSQRNVTSESPGYLHPASYKPHDSDHKAEQLGASKPAAVAAVDDPEKSLQASQTHLKEAQAKLPSGSARSCTKVHKKGIALGRSVDLTKFSNYEELVVELDQLFEFGGELMSPKKDWLIVYTDDEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRNEENQSASEGADAKVECQSHHPASLPDN 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1578 852 MobiDBLite consensus disorder prediction 655 671 - -
Lele24g1578 852 Pfam AUX/IAA family 774 815 IPR033389 -
Lele24g1578 852 FunFam Auxin response factor 320 392 - -
Lele24g1578 852 FunFam Auxin response factor 155 259 - -
Lele24g1578 852 MobiDBLite consensus disorder prediction 601 639 - -
Lele24g1578 852 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Lele24g1578 852 SMART B3_2 157 259 IPR003340 GO:0003677
Lele24g1578 852 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Lele24g1578 852 SUPERFAMILY DNA-binding pseudobarrel domain 154 286 IPR015300 -
Lele24g1578 852 MobiDBLite consensus disorder prediction 817 852 - -
Lele24g1578 852 SUPERFAMILY CAD & PB1 domains 731 805 - -
Lele24g1578 852 Gene3D - 724 817 - -
Lele24g1578 852 ProSiteProfiles PB1 domain profile. 728 810 IPR000270 GO:0005515
Lele24g1578 852 Gene3D - 154 259 IPR015300 -
Lele24g1578 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 817 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele24g1578 852 MobiDBLite consensus disorder prediction 817 836 - -
Lele24g1578 852 MobiDBLite consensus disorder prediction 603 635 - -
Lele24g1578 852 MobiDBLite consensus disorder prediction 1 42 - -
Lele24g1578 852 MobiDBLite consensus disorder prediction 394 414 - -
Lele24g1578 852 MobiDBLite consensus disorder prediction 18 42 - -
Lele24g1578 852 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele24g1578 852 FunFam Auxin response factor 724 817 - -
Lele24g1578 852 Gene3D - 320 391 - -
Lele24g1578 852 CDD B3_DNA 155 257 IPR003340 GO:0003677
Lele24g1578 852 MobiDBLite consensus disorder prediction 655 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1578 Lele-ChrLele24 21465659 21470025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1578 1 847 B3 DNA Binding Superfamily AT5G62000 64.483 0.0 1099
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele24g1578 B3 1.6e-21 CL0405