Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1575 ATGCCTTCTGAAATAATGGATCAAAGGGCTGTCTCTGCCTCATCACACTTTTTTGATGACATTTCGTTTTTCTCTGAGAAAAATGCCGGATTGGAGAGGCCAAGATCTATTCATGACCACTACCATCAAGGAAAGAATGGAATAGTAGCGTCACCTGGCAGCATTTTGAATGCTTTGTCACCTGGGGAAATTAGTGCAAAGACTGGCTGGTCAAAGTCATCGACAGGTCTGTCTGGAGCAACCATTGAAAAGCTGCATGTTGGTGAAGAAGGCAATGTTGATATGTTTAAATCCTCCAAGGAAGCATTAAATCATCATCCCAGATCTCAGTCTAATGTGCGTATGCAGCCAGCATCTAACCCATATGGTTTAATTGGCAATAAGATCATCACCAATGCTGCCTCCTGTGAAAGTAGTTTATTCTCAAGCTCACTATCCGAGATATTTACCCGGAAGCTGAGGTTAGCGGAAAATTATGTTCTGCCTCAACAGCCTGTTACTGTTGGTTCCCTTCCTGACGAGGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTCACTGATGACTTAGGATCCAATATTCTTGCCAAAACTGGCGATGACATGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTAGAAGGTGACGAACATCTAACTTCAGGGAAAATGACCAGCGGTCCAGATGGAGATCTTGGTTGCTGTGGAGGCTTCAAAGAGAAACTTCTTTTTGGTGAAAACCCTTCTAGAACACTATTTGTTAGAAACATCAACAGCAATGTCGAAGATTCTGAGCTGAAGGCTCTCTTTCAGCAATATGGTGATGTCCGAACCGCTTATACTGCTTGCAAGCATCGGGGATTTGTTATGATTTCTTATTATGATATAAGAGCTGCACAAAATGCAATGAAAGCTCTTCAAAACAGATCATTGAGGTCTAGGAAACTTGACATACATTATTCGATACCAAAGGTAAATGCTCCAGTGAAGGATATTAGCCATGGTTCATTGCTTCTATCAGGACTTGATTCTTCTGTTTCACATGATGAAATTCTACAAATTTTTGGATTTTATGGAGAAATCAAAGACATTTATGAATCTCCAGAAATGAATTATGACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAACAAGAGTGAAATTGCTGGGAAGCTGATCAAGCTTGAACCCAGCCATCCTAGGGGTTCAAGTGCAACATGTTTGATGCAGCAATCTCAGAAGGGGCAGAATGAGTCTGATCTTAGTCAGAGTATGGGTGACAACTTATCATTAAGCCAGAATGCAATAACGTCTTCTGGAGTAATTGCATCTGGCTGCTTGGACAATGGATCTGATCATGGATTTCCAGCAGCAATACGACAAACTGTGGATGCCTTATCCATGAATGTATGGTCACATGTGAATTCTGGCATTCACAACACAGTGAGAGGGCCATCAATTCCTGGATTCCATCCCCATTCCCTCCCTGAGTATCATGATGGTTTAGCTTGTGGCAGTCCTTACAACTTTTCAAGAACCTTTAGCAATGTATCTGGTAATATGGGTCCAGGACTGACAGATAGCTCTGACAGCAGACACACTCTGGGATTTGGTTCAACTGGGAAATTGACAGACTTTAACGGAGGAAATGGGAGCCTTCCTAATCATGGGCTTTATCACATGTGGAGCGGATCCAATTTGCACCAGCAAACTCCACCAGGTCCAATGATCTGGCAGAAAAAACTGTCATTTGTTAATGGTGCTTGTGCTCCTTGTCTTCCACAGATGCCTGACTTTCCCAGATCATCATCTCGTATGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGCTACAGCCTCCCCATGGGACAGGCAACGTTCTTATTTGGCAGATTCCCCTGACTCCTCTGGTTTTCACATGAGTTCTCTTGGTAGTACAGGTTTTCCCGGTACATGGCAATTGCATCCTCCAGAATTTTCTTCTCACAAAATGTTTCCTCATGTTGGTGGGAATGGCATGGATTTGTCTCCCAATGCGGGGCAGAGCTCCCCAAATCAGTTTTCACATGTTTTCCCTGGGAGACATCCCATGACTTCAATGTCTAAATTTGATTCGACCAATGACAGAATGAGAAACCCCTATCACCGTAGAAGTGATGCTAACACTAACGGTGCTGACAAAAAGCAATTTGAACTTGACCTAAGTCGCATATTGAACGGCGAAGACACACGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTCTTGTATTTGCCAATTGACTTCAAGGCAAGTATTTATAACAAATGTAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCCTTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCACTTGCCTATGCTAGAATTCAGGGCAAAACTGCTCTTATTGCACATTTCCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTTCATTCAGAGGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCTATGGGGGCCAATATTAGATTGAGGCCTGGAAAAACACGTGCTAGGAGCCCATCGGCTTCGACTAGTGGAGAGGAGTCTTCTAATGGAATAATAAGTTCTTCAATGGGCTCTTCAAAAAACTCAGACTGA 2847 0.4257 MPSEIMDQRAVSASSHFFDDISFFSEKNAGLERPRSIHDHYHQGKNGIVASPGSILNALSPGEISAKTGWSKSSTGLSGATIEKLHVGEEGNVDMFKSSKEALNHHPRSQSNVRMQPASNPYGLIGNKIITNAASCESSLFSSSLSEIFTRKLRLAENYVLPQQPVTVGSLPDEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDDLGSNILAKTGDDMEDFDLFSSGGGMELEGDEHLTSGKMTSGPDGDLGCCGGFKEKLLFGENPSRTLFVRNINSNVEDSELKALFQQYGDVRTAYTACKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPVKDISHGSLLLSGLDSSVSHDEILQIFGFYGEIKDIYESPEMNYDKFIEFYDVRAAEAALRALNKSEIAGKLIKLEPSHPRGSSATCLMQQSQKGQNESDLSQSMGDNLSLSQNAITSSGVIASGCLDNGSDHGFPAAIRQTVDALSMNVWSHVNSGIHNTVRGPSIPGFHPHSLPEYHDGLACGSPYNFSRTFSNVSGNMGPGLTDSSDSRHTLGFGSTGKLTDFNGGNGSLPNHGLYHMWSGSNLHQQTPPGPMIWQKKLSFVNGACAPCLPQMPDFPRSSSRMLRASHIDHHVGSAPVATASPWDRQRSYLADSPDSSGFHMSSLGSTGFPGTWQLHPPEFSSHKMFPHVGGNGMDLSPNAGQSSPNQFSHVFPGRHPMTSMSKFDSTNDRMRNPYHRRSDANTNGADKKQFELDLSRILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIYNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHSEGPNAGDPEPFPMGANIRLRPGKTRARSPSASTSGEESSNGIISSSMGSSKNSD 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1575 948 MobiDBLite consensus disorder prediction 920 948 - -
Lele24g1575 948 CDD RRM1_MEI2_like 268 343 IPR034453 -
Lele24g1575 948 SUPERFAMILY RNA-binding domain, RBD 778 866 IPR035979 GO:0003676
Lele24g1575 948 SUPERFAMILY RNA-binding domain, RBD 266 428 IPR035979 GO:0003676
Lele24g1575 948 MobiDBLite consensus disorder prediction 430 454 - -
Lele24g1575 948 FunFam Protein MEI2-like 1 353 449 - -
Lele24g1575 948 Gene3D - 263 353 IPR012677 -
Lele24g1575 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Lele24g1575 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Lele24g1575 948 SMART rrm1_1 778 858 IPR000504 GO:0003723
Lele24g1575 948 SMART rrm1_1 355 423 IPR000504 GO:0003723
Lele24g1575 948 SMART rrm1_1 270 338 IPR000504 GO:0003723
Lele24g1575 948 Pfam RNA recognition motif 2 776 876 IPR007201 -
Lele24g1575 948 MobiDBLite consensus disorder prediction 740 758 - -
Lele24g1575 948 MobiDBLite consensus disorder prediction 892 948 - -
Lele24g1575 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 421 IPR000504 GO:0003723
Lele24g1575 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Lele24g1575 948 MobiDBLite consensus disorder prediction 428 454 - -
Lele24g1575 948 CDD RRM3_MEI2_like 779 868 IPR034454 -
Lele24g1575 948 PANTHER RNA RECOGNITION MOTIF-CONTAINING 111 929 - -
Lele24g1575 948 Gene3D - 354 452 IPR012677 -
Lele24g1575 948 MobiDBLite consensus disorder prediction 730 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1575 Lele-ChrLele24 21410490 21416273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1575 271 482 Eukaryotic Initiation Factors Gene Family AT2G36660 18.455 1.77e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1632 21 24266344 24272394 Lele24g1575 24 21410490 21416273 hybridization
Lele22g1614 22 21655241 21661008 Lele24g1575 24 21410490 21416273 hybridization