Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1485 ATGGCTGGCAAAAGTGGCAAGAAACCATTAAGCCTCAACGATAGCCATTATCGATTCCTCCTAGACCTTTCTGCTCCTCCGAAGCCCTCCTCAAAGCCATCTGACGATGACGACGAGTCGTCCCCGACAATACTCAAAGGCCGAAGGCGGCCCGAGGGAAAAGCTTCATTTAGCAATGAGGAAGATGATAACATCCCTGGATTTTCTGCGATTACCGACTTTGATTCTCCTATTGAGCTACGCTCGGCGGAAGACAAAGAGCCCGTCAAGGTAGATGGTCGACATCGTCCCTGTAGAGTCTCGCCGAAGGAAAATAGTAAATATCAAGGTGACGATATTCCCCAGTCCAAAGACGCGACCGACTTTGATACCCACAAAGGGGAAAAGAAAACTAAGGTCAAAATGGAAGGCCGGCGTCGCCTATGCAAGGTGTCATATGCAGACAATGATAACAATACTGATAAAATGGTGGCGCTCGATGACTCGGAGGTTTCTGACCTTGTGGATTTTGATTCACCCCTTTTGCCGACGAAAAAATCAACTGGGATTAAGAAGAGTCAGGGTGGGAGTGAAATTAGGGATATATTAGATGAGTTGAGCTCGAAGTTTGATATTCTGTCAATAGAGAAGAAGCAGGTAGCGAAATCAGCGCATACATTTGAAAATTGTTCAGGATTGGCTATAGGAAATGAAACTACGGAAGATAAGAATATAGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAACAGGACCCATGTGACAGTTCATCTGATGCATCTAAGAGTGCGACTGGAAGCATTGAACATGTAGAAGATGAGTCGGACGATTCTGTTGAAGTGCTGGATCATTTTGACTCTGAAAATGTTGATTCTATAACTTTAAATGGTCCACATTCCACATACAAGTTGCCAGGCAAAATTGCAAAAATGTTGTATCCCCATCAGCGTGATGGTTTGAAGTGGCTCTGGTCTCTGCATTGTCTGGGTAAGGGTGGAATCCTGGGGGATGACATGGGTCTAGGAAAAACAATGCAGATTTGTAGTTTTCTAGCTGGTTTGTTCAATTCACGTTTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCTTACTTCCCCATTGGATCAAAGAATTATCAGCTGTTGGTCTTTCTGAGAAGACAAAGGAATACTTTGGAACTTGTACTAAAGCCCGAGAGTATGAACTTCAATACATACTCCAGGACAAAGGTGTTCTTCTTACAACATATGACATTGTTCGCAATAATTCTAAATCATTACGCGGGAATTATCTATCTGATGATGAGGAAAGTGAAGACGGCCCCATATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAATCCAAGCACACAAAGAGCTAAAAGTTTGCTAGAGATACCAAGTGGTCATCGCATAATCATCAGTGGCACGCCATTGCAAAATAATCTGAAGGAGTTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAGAAATGGTTTAAAGAAAATTATGAGTCAGCTATACTTCGTGGAAATGAAAAAAAAGCTTCTGAGAGAGAGAAGCGTGTTGGTTCTTCTGTTGCAAAGATGCTCAGAGATCGTATTCAGCCTTACTTTTTAAGACGCCTCAAGAGTGAGGTTTTTAATCAAGATGAAAAGAATACAACAACGAAACTCTCTCAGAAACGAGAGATTATCGTGTGGCTACGATTGACTACTGTTCAGAGATATCTTTATGAAGCGTTTCTGAGGAGTGAGATTGTTCTTTCAGCATTTGACGGCTCACCACTTGCTGCACTTACGATTTTGAAGAAAATTTGTGATCATCCGCTTTTGTTGACTAAGCGGGCAGCTGAAGATGTGTTGGAAGGGATGGACTCAATGTTGAAGCCAGAAGAGCTTAACGTTGCGGAGAAATTGGCAATGCACATAGCTCATGTTGCTGACACAGACAAGTTCAAGGCTGAGCATGATGTCTCGTGCAAAATATCTTTCATAATGTCACTACTGGATAATTTGATCCCACAAGGACATCATGTGCTTATTTTTTCTCAGACTCGCAAAATGCTTAATCTTATTCAGGAATCTATAACGTCCAAAGGCTATGAATTTGTACGAATTGATGGAACAACAAAAGCTAGTGATAGAATAAGGATTGTTAATGAATTCCAAGATGGTTCTGTAGCTCCCATATTTCTTTTGACGTCTCAAGTTGGTGGTTTGGGGTTGACACTTACTAAGGCAGATCGTGTTATTGTAGCTGATCCTGCTTGGAATCCGAGTACGGATAACCAAAGTGTTGACCGAGCATACCGTATTGGCCAAAAGAAAGATGTTATTGTATATAGACTAATGACATGTGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTATACAAGGGGGGATTATTTAAAACAGCAACAGAGCATAAAGAACAAATTCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTCAGCCTTCCTAAGGAGGGTTTTGATGTGTCTGTTACTCAGAAGCAATTAGAGGAGGAGCATGCTGGCGAATATACAGTCGATGACTCTTTTAAAGTACACATAGAGTTCTTAAAAGGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTCTCCAAAACAGCACCAGTTCAAGAAGCGCCTGAGGATGATGAAGTGTCAAGGAACCATGGGACCAGATATGTTGGAACTTCCGCATCTACTTCCATTGAACGTCCTGTTGATGGAGCTGAGTTTGCTTATAATCCAAAGGAAGTCAAATTGAGCAAAAAAGTTTCTTCCCCAAGTAGTGCTGGTAAATTGACTGAGTCTGAAATCAGGGATAAAATCAAACGGATTTCTCAAACACTTGCAAACAAGGCGATGATTTCGAGATTACCTGATGGGGGAGAGAAACTACAGCAGCGGCTTGCTGAACTAAATTCGGAGCTCAGCAAATTGAAGATGGAAGAAAGAAATGTGATTGATTTGGATGATATAAGTGGAGAATTTCAAAGGGCATTAAATGTGTAG 3057 0.4184 MAGKSGKKPLSLNDSHYRFLLDLSAPPKPSSKPSDDDDESSPTILKGRRRPEGKASFSNEEDDNIPGFSAITDFDSPIELRSAEDKEPVKVDGRHRPCRVSPKENSKYQGDDIPQSKDATDFDTHKGEKKTKVKMEGRRRLCKVSYADNDNNTDKMVALDDSEVSDLVDFDSPLLPTKKSTGIKKSQGGSEIRDILDELSSKFDILSIEKKQVAKSAHTFENCSGLAIGNETTEDKNIDYASADSSFSAQQDPCDSSSDASKSATGSIEHVEDESDDSVEVLDHFDSENVDSITLNGPHSTYKLPGKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICSFLAGLFNSRLIKRALVVAPKTLLPHWIKELSAVGLSEKTKEYFGTCTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGNYLSDDEESEDGPIWDYMILDEGHLIKNPSTQRAKSLLEIPSGHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKENYESAILRGNEKKASEREKRVGSSVAKMLRDRIQPYFLRRLKSEVFNQDEKNTTTKLSQKREIIVWLRLTTVQRYLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEELNVAEKLAMHIAHVADTDKFKAEHDVSCKISFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITSKGYEFVRIDGTTKASDRIRIVNEFQDGSVAPIFLLTSQVGGLGLTLTKADRVIVADPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQKQLEEEHAGEYTVDDSFKVHIEFLKGQGIAGVSHHSLLFSKTAPVQEAPEDDEVSRNHGTRYVGTSASTSIERPVDGAEFAYNPKEVKLSKKVSSPSSAGKLTESEIRDKIKRISQTLANKAMISRLPDGGEKLQQRLAELNSELSKLKMEERNVIDLDDISGEFQRALNV 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1485 1018 MobiDBLite consensus disorder prediction 31 59 - -
Lele24g1485 1018 MobiDBLite consensus disorder prediction 18 134 - -
Lele24g1485 1018 FunFam Protein CHROMATIN REMODELING 24 291 569 - -
Lele24g1485 1018 Coils Coil 978 1005 - -
Lele24g1485 1018 MobiDBLite consensus disorder prediction 244 265 - -
Lele24g1485 1018 MobiDBLite consensus disorder prediction 244 275 - -
Lele24g1485 1018 Gene3D - 291 570 IPR038718 -
Lele24g1485 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 831 IPR001650 -
Lele24g1485 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 841 IPR027417 -
Lele24g1485 1018 Pfam SNF2-related domain 327 619 IPR000330 GO:0005524|GO:0140658
Lele24g1485 1018 PANTHER SNF2/RAD54 FAMILY MEMBER 126 998 - -
Lele24g1485 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 549 IPR027417 -
Lele24g1485 1018 SMART ultradead3 307 507 IPR014001 -
Lele24g1485 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 499 IPR014001 -
Lele24g1485 1018 MobiDBLite consensus disorder prediction 78 134 - -
Lele24g1485 1018 Gene3D - 571 865 IPR027417 -
Lele24g1485 1018 CDD SF2_C_SNF 661 792 - -
Lele24g1485 1018 SMART helicmild6 698 781 IPR001650 -
Lele24g1485 1018 Pfam Helicase conserved C-terminal domain 669 781 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1485 Lele-ChrLele24 20677715 20686541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1485 312 835 RAD5 or RAD16-like Gene Family AT1G02670 25.874 1.71e-36 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele24g1485 SNF2_N 4.4e-46 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1522 22 20896310 20905252 Lele24g1485 24 20677715 20686541 hybridization