Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1482 ATGCCTATCTTGATGCCGCACTATTCGTTTCTCTCTAAAACCTCATATCATATGCCTCTTTCTTCTCTCTCTTCCCCCAAACAGCTAATAATAATGAAGGATGAGAGTAGTTCTGTTAGCAATAATACAACAAATTTGCCAAGCAACAACACAGGCAGCCCTGAAAGCCCTTGCTTAAAATCATCATCATCATGCACAACCCCAACAACAACAACAACAAAGAAGGAACAAGATCGATTCCTTCCCATTGCAAATGTTGGGAGGATCATGAAGAAAGTGATGCCTGCAAATGGAAAAATCTCAAAGGACGCAAAAGAAACAGTTCAAGAATGTGTCTCCGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGATAAGTGTCAGAGAGAAAAGAGAAAGACCATCAATGGCGATGACATTATCTGGGCCATCACAACACTTGGCTTTGAGGACTACGTTGATCCCTTGAAATCTTACCTTCAGAAATATAAAGAGATAGAAGGAGAGAGGCTTAATGTTCCCAAACAACAACGTTCTTCTTCTTCTTCTTCTGATCATCATCATCATCAACAAAGGCTACAACATAACAATAATAATAATGCTAATATTAATATTAATAATAATAATAACCTACCAGCTTTAAACAATGGTGTATATTCTTCAACCAGTCTCATTTCTCATTATCAGGCTCCTCCTCTTCATCCTCCTCCCCCTTATGTGACAACGGATCAGACATTTTCGTTACCTTTCACATCAAATTCAATTCAGAAACAGTTACAGCCCCAAGACAATATGGATTCAGTGGGGCATTGAGGAGAGGAACCATTGGATGAAGTTGGGAAGAGTATGAGTGTTGGGACGATAATGGTATTGGGTGAAAGTGAAGAAATCAGACTACTAGAAATCAGGGTACTTCCTCTCCGGCGGAGAAGAGCTCTTCAGGTGGCTTCAGGGTCTCGAACGTACTTGGAAAGTGTCGCCGATGATGACGAAGGCATCAGGGCAAGGGTGAACTGCGAGCCACTTGTTGTCGATGAAGACTTCGAAGCCGCCGACTTGATCCTGATGAAGAATGGTGACACTGGTAGGGTCACTGTGAGGACCAGTGCCCATGGTGAGGTTGGAACTGTTGCATGGAGGGTATACGTTCAATCTCATTATGCCTCCTCGGTCCTTGAAATATTCCTCTTCATCTACGTTCGTTCTACTCCTAAACTCATAGCCAATACCTCCATTATCACTTCAGACAGCTTCTTCATCGCATCACAGAACCTCTGA 1278 0.4288 MPILMPHYSFLSKTSYHMPLSSLSSPKQLIIMKDESSSVSNNTTNLPSNNTGSPESPCLKSSSSCTTPTTTTTKKEQDRFLPIANVGRIMKKVMPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYKEIEGERLNVPKQQRSSSSSSDHHHHQQRLQHNNNNNANININNNNNLPALNNGVYSSTSLISHYQAPPLHPPPPYVTTDQTFSLPFTSNSIQKQLQPQDNMDSVGHXGEEPLDEVGKSMSVGTIMVLGESEEIRLLEIRVLPLRRRRALQVASGSRTYLESVADDDEGIRARVNCEPLVVDEDFEAADLILMKNGDTGRVTVRTSAHGEVGTVAWRVYVQSHYASSVLEIFLFIYVRSTPKLIANTSIITSDSFFIASQNL 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1482 425 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Lele24g1482 425 PRINTS CCAAT-binding transcription factor subunit A signature 146 164 - -
Lele24g1482 425 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Lele24g1482 425 MobiDBLite consensus disorder prediction 194 212 - -
Lele24g1482 425 FunFam Nuclear transcription factor Y subunit B-3 69 194 - -
Lele24g1482 425 Gene3D Histone, subunit A 68 208 IPR009072 GO:0046982
Lele24g1482 425 ProSitePatterns NF-YB/HAP3 subunit signature. 111 127 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele24g1482 425 SUPERFAMILY Histone-fold 77 196 IPR009072 GO:0046982
Lele24g1482 425 MobiDBLite consensus disorder prediction 34 75 - -
Lele24g1482 425 MobiDBLite consensus disorder prediction 227 278 - -
Lele24g1482 425 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 52 206 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele24g1482 425 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 80 144 IPR003958 -
Lele24g1482 425 MobiDBLite consensus disorder prediction 170 212 - -
Lele24g1482 425 MobiDBLite consensus disorder prediction 240 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1482 Lele-ChrLele24 20667368 20669964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1482 32 268 CCAAT-HAP3 Transcription Factor Family AT2G13570 52.846 2.79e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele24g1482 CBFD_NFYB_HMF 9.9e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1537 21 23552483 23553184 Lele24g1482 24 20667368 20669964 hybridization
Lele22g1518 22 20873064 20873747 Lele24g1482 24 20667368 20669964 hybridization