Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1475 ATGTTTTCAAAAGAAAATGTTGTTTTTGGAGAAAAACCGGATCATGTAACGCCGATAGGAGTTCTATGTGCCTTTAGCCATGCTGGACTGGTTGAAGAAGGGGGTCATTATTTTCACACAATGAGAACCAAGCATGGTTTAGAATCGTTGAAGGATCATTATACACGCATGGTTGATGTACTTGGTCGGGCCGGTTGTCTGGATGAAGCCAAAAACTTGATAGAGGCGATGCCATTGCAGCCTGATTCTGTTGTATGGGGATCTCTACTTGCTGCTTAGCTTGGTAGATGGAAAGATGTTGCGACAGTCCGAAAACTGATGAGACAATGGGGAGTAATTAAGCTGCCTGGTTGCAGTTGGATTGAAATTCAGAGTCATGTGCATTTGGGGGGGGGGGTTGTTGTTGGGAATAAGAAGGGTGAGTGTTGGTCTATCCAAGTGCGAGAAGAATCTCCTGGAAATTGCAAACCTGCCGGATATTCAGTACCCAGTGATGATGCAGAAGGATTTAAGTACTTCTTTAGGGTTTCCAAGAAGACTTTTTTGAGTACTGGAGGATCTCATATCAAGGCCACCATCAACATCGAGGGAAGGCTTCTTAGCATCAAGAAGCAGGTTGTGATTGCCGCCAGAAGACTAGCATCCGGTGAATCTCAAGTTTCAGTTGGAGCTTCCTTTGGGATTGGGCAGCCAACAGTTTCTCAGGTAACTTGGAGATTCATTGAGGCAATGGAAGAACGCGCTAGACACCCTCTCAAGTGGCCTGATTTCGATAGAACGGCAGACATCAAGTCCAAGTTCGAGTCATCCTACGGGTTGCCTAATTGATTTTTCAGACACTGCGAGAATAGGGAGCGATTAAATGGAAAGGCAATAACCTCAAGTGGAGGAGACATGATTAGAGAATATGTAATTGGCGGATTTGGTTCCCCTCTTCTTCCATGGCTCATAACTCCTTATAAAACTGATAGTATCTCGAACAACCAGTCCAGTTTTAACGATAAGCACTGGGCCACGAGGCTGCTTGCGGGGAGAGCTTTCTCACAGTTAAGGGGCAGTTGGAAAATCCTTAGTAAGATGTTGCCTTGTATGGTCATCATAATTCTGGATATGGGGAACAATATGCTCCATACTGTACCTCGCTCTCCTCGTTCCTCTGGAAGTGTGTTCTTTCTGGTGGGTCATCAACTAAGCAAGTGGAAGACTAATAATGGATGTAATTTGGATACTAGAGTTTTTATAAGTAGGTTGTTTCATAAGAAGAGATGCAACTCAAAATGCATTGGAGCACCCATATCCTGTTCAGCGGCAATTAGGAGCGATTCCTTTATACCTTCTAAAGAGCAACTAAGTGATGCGCGATTGATATATTCCATTGCTCCAGCCATGGGCCACAACCAGGAATCTCATCCTGAATCACATTTAAGGGTTCCTGCAATTGTGAATGCTCTTGAAGAAATGAAGCTCACTTCAAAGTTCCGGGGTTCTGAGATCATTGAACTTCAAAATTTTGAGCCTGCCTCAGTAGAGGACGTTGGTAGTGTGCATGCAAGAGCCTATGTATCTGGGCTTGAGAAGGCTATGGATCAAGCTTCAGAGAAAGGACTTATTTTCATTGATGGCTCTGGACCAACATATGCCACAGCTACTACATTCCAGGAGTCATTAGTCGCAGCTGGAGCCGGATTAGCCTTAGTTGATTCAGTGGTCACAGCTTCAAGGAACAGCCGAGATCCACCCACTGGTTTTGCTTTGATAAGACCGCCAGGACATCATGCTGTTCCACAAGGGCCTATGGGCTTCTGTGTTTTTGGAAATGTGGCCATTGCTTCTCGTTATGCTCAACGTGTACATGGTCTAAAGCGCGTGTTTATAATTGATTTTGATGTCCACCATGGGAATGGAACAAATGATGCTTTCTATGATGATCCAGATGTATTTTTCCTCTCAACTCACCAAGCTGGAAGCTACCCTGGCACTGGTAAGTTTGATGAGGTGGGAGCTGGAGATGGAGAAGGAACCACATTAAACCTACCTCTACCAGGAGGATCAGGTGATACTACTATGAGAACTGTGTTTGATGAAGTCATTGTGCCTTCTGCTCAAAGGTTTAAGCCAGACATTATTCTTGTTTCTGCTGGGTATGATGCTCATGTGTTGGATCCACTAGCCAATTTACAGTACACAACAGGAACATACTACATGCTTGCGTCCAATATAAAACAATTAGCAAAACAATTATGCGGAGGCCGATGCGTGTTCTTCTTGGAGGGAGGATATAATCTCAAATCTCTTTCATATTCAGTGGCAGACTCGTTCCGTGGTCTTCTCGGCGATCGGAGTTTGGCATCTGAGTTTGATGATCCAAACATTCTCTATGAAGAACCATCAACAAGGGTTAAGCAAGCAATTGATAGGATCAAGGCCATACATTCCCTGTGA 2442 0.4435 MFSKENVVFGEKPDHVTPIGVLCAFSHAGLVEEGGHYFHTMRTKHGLESLKDHYTRMVDVLGRAGCLDEAKNLIEAMPLQPDSVVWGSLLAAXLGRWKDVATVRKLMRQWGVIKLPGCSWIEIQSHVHLGGGVVVGNKKGECWSIQVREESPGNCKPAGYSVPSDDAEGFKYFFRVSKKTFLSTGGSHIKATINIEGRLLSIKKQVVIAARRLASGESQVSVGASFGIGQPTVSQVTWRFIEAMEERARHPLKWPDFDRTADIKSKFESSYGLPNXFFRHCENRERLNGKAITSSGGDMIREYVIGGFGSPLLPWLITPYKTDSISNNQSSFNDKHWATRLLAGRAFSQLRGSWKILSKMLPCMVIIILDMGNNMLHTVPRSPRSSGSVFFLVGHQLSKWKTNNGCNLDTRVFISRLFHKKRCNSKCIGAPISCSAAIRSDSFIPSKEQLSDARLIYSIAPAMGHNQESHPESHLRVPAIVNALEEMKLTSKFRGSEIIELQNFEPASVEDVGSVHARAYVSGLEKAMDQASEKGLIFIDGSGPTYATATTFQESLVAAGAGLALVDSVVTASRNSRDPPTGFALIRPPGHHAVPQGPMGFCVFGNVAIASRYAQRVHGLKRVFIIDFDVHHGNGTNDAFYDDPDVFFLSTHQAGSYPGTGKFDEVGAGDGEGTTLNLPLPGGSGDTTMRTVFDEVIVPSAQRFKPDIILVSAGYDAHVLDPLANLQYTTGTYYMLASNIKQLAKQLCGGRCVFFLEGGYNLKSLSYSVADSFRGLLGDRSLASEFDDPNILYEEPSTRVKQAIDRIKAIHSL 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1475 813 Pfam Histone deacetylase domain 470 774 IPR023801 -
Lele24g1475 813 PANTHER HISTONE DEACETYLASE 2-RELATED 447 779 - -
Lele24g1475 813 MobiDBLite consensus disorder prediction 660 681 - -
Lele24g1475 813 Gene3D Tetratricopeptide repeat domain 3 151 IPR011990 GO:0005515
Lele24g1475 813 Pfam E motif 88 122 IPR046848 -
Lele24g1475 813 Gene3D Histone deacetylase domain 442 811 IPR037138 -
Lele24g1475 813 PRINTS Histone deacetylase superfamily signature 588 611 IPR000286 -
Lele24g1475 813 PRINTS Histone deacetylase superfamily signature 706 716 IPR000286 -
Lele24g1475 813 PRINTS Histone deacetylase superfamily signature 622 637 IPR000286 -
Lele24g1475 813 SUPERFAMILY Arginase/deacetylase 467 780 IPR023696 -
Lele24g1475 813 CDD HDAC_classII 470 777 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1475 Lele-ChrLele24 20595496 20603588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1475 10 128 Glycoside Hydrolase AT3G49170 31.613 9.49e-20 92.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1526 21 23485092 23490379 Lele24g1475 24 20595496 20603588 hybridization
Lele22g1513 22 20818037 20826136 Lele24g1475 24 20595496 20603588 hybridization