Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1438 ATGGCTCCGGCCAACTCCTCGGCGGCGGCTCAGAGGCTCATCTGCTTCAGCCGCCGTACGCAAGCTCCGCGGCACTCGTCGCCGCTGGCCTCACCTCCGGTCAAGAAGTATAAGTCATTGACCGAGATAATGGCCAAGGCACGATATGCTGTTGTTGAGAATGATGATTACAGCGACGTGTTGTGTGACCAATGTGGCTCTGGTGAACGCCCGGACGAGCTGCTTCTGTGTGATAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCCATTGTTGTTAGAGTTCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAGAAGTTTTTCTCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAATGTGCCGATCTTAAAAACAAGTGCTCTTCTCCCCAAGATGCCAAGAGGCGTAAAAGGCGAACATCCCTGATATTGCACAAGAAACGAAGAAGACTATTGCCATTTATTCCTACAGAAAATCCTTCCCAGAGAATGAAACAGATGGGTTCTCTTGCTACTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCACCTGAAATGGCTCCTAGGTCTGCTAACCATGCCGATTTCGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCAATGTGTAGAAGAGGGGAATGCCCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGGTATACAGTAGAGGCTGATGGCCCAATCAAGGACATGATATTCATTGCTGAATACACAGGCGATGTGGATTACATAAAAAACCGAGAACATGATGATTGTGACAGTCTGATGACCCTTCTGCTAGCAACTGATCCTACTAAAAGTCTTGTAATCTGCCCCGATAAACGCGGAAACATTGCTCGCTTTATAAGTGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCAAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTGTCTGA 1122 0.4501 MAPANSSAAAQRLICFSRRTQAPRHSSPLASPPVKKYKSLTEIMAKARYAVVENDDYSDVLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKCADLKNKCSSPQDAKRRKRRTSLILHKKRRRLLPFIPTENPSQRMKQMGSLATALTALHMEFSDDLTYSPEMAPRSANHADFENGGMQVLSREDIETLEHCRAMCRRGECPPLMVVYDSCEGYTVEADGPIKDMIFIAEYTGDVDYIKNREHDDCDSLMTLLLATDPTKSLVICPDKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFV 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1438 373 SUPERFAMILY SET domain 227 361 IPR046341 -
Lele24g1438 373 Pfam PHD-finger 62 107 IPR019787 -
Lele24g1438 373 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Lele24g1438 373 CDD SET_ATXR5_6-like 236 373 - -
Lele24g1438 373 Pfam SET domain 279 361 IPR001214 GO:0005515
Lele24g1438 373 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 135 371 - -
Lele24g1438 373 SMART PHD_3 61 107 IPR001965 -
Lele24g1438 373 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Lele24g1438 373 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Lele24g1438 373 SUPERFAMILY FYVE/PHD zinc finger 28 107 IPR011011 -
Lele24g1438 373 Gene3D SET domain 145 373 IPR046341 -
Lele24g1438 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 121 IPR013083 -
Lele24g1438 373 ProSiteProfiles SET domain profile. 239 361 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1438 Lele-ChrLele24 20337036 20341001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1438 59 115 C2H2 Transcription Factor Family AT3G01460 36.207 8.84e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele24g1438 SET 4.9e-06 No_clan