Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1435 ATGAAATCTCCGGTGAGTCTATGCACCGGAGTTACCTACGACCGTTCTAGCATCCAACGGTGGCTTGACAACGGCAACAACACCTGCCCGGCCACCATGCAGGTTTTGCAAACCAAAGAATTTGTTCCTAACTGTACTCTACAGAGGCTTATCCAGATCTGGTCTGACTCGGTTCAAAACCGAGTCGAATCGGCCGATTCTCCGGCCCCCAGAATAGTCCCCTCACCGGATCAGGTCGTCAACTTTATGAAATATTTGGACGGCCAGGGCGAGAACTGTCTCGATTCGTTAACGAGAATTGTATATTTCGCTGAAGAATCTGAAGAGAATCGGGAGTTCCTCGCGAAGTTAGACGGATTCGTGCCTTTACTCGTGGATTTACTCGACAATGTCAAGGGCGCCCTTGAAATGCTCGAGAGAGTAGTTAATGTTTTGGATACGGTTGTAAATAAAATCGAAGATCGTGAGCAGTTCAAGAAATTGATGTTGAAGAACCACGATAATTGCCTAGCTTCTCTCCTCCTTGTTCTGCAACAAGGCAGCGCCGGCTCGAAAATCGGATCGGCGAGGATTCTGAAGTTCATCGCGGTGGATACCGAGTCCAAAGCCATGATCGCCGAAAAGGAAGGTTTGATGTCCGAATTGCTCAAATCAGTCGATCCCGCCGAGGACCCGGCGCTAATCGATAACGCCTTGTCATGTCTGATTGCAATATCGACGTCGAAACGGAACAAGTTGAAATTGGTCCATCTTGGAGCTATCAAGAAACTTTCGCAATTACTTTCCCGCTCAAATTCGAACACTTCCGTAACGGAAAATGTTCTGAAACTTCTCGAAACGGTGTCGTCAACAAAAGAAGGTAGGTCGGAGATTTGCGAGGACCCGGCATGTTTACAGGCGGTATTGCAGAAAGTGATGAAGGTAACGATCATCGCGACGGAGCACGCGGTGATGATACTGTGGACTGTGTGTTATTTGTTTCGTGATCAGAAGGCGCAGGAAGTGGTGGCAATGGCCAACGGTTTCACCAAATTTCTGCTTCTGATGCAGAGCAATTGTTCGCCGGCGGCTCGTCAAATGTCGGCCGATTTGCTAAAGATTTTTCGCGTTAATTCGAAATCGTGCCTTTCTTGCTACGATACTAAGACCACCCATATCATGCCCTTCTGA 1170 0.4803 MKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNCTLQRLIQIWSDSVQNRVESADSPAPRIVPSPDQVVNFMKYLDGQGENCLDSLTRIVYFAEESEENREFLAKLDGFVPLLVDLLDNVKGALEMLERVVNVLDTVVNKIEDREQFKKLMLKNHDNCLASLLLVLQQGSAGSKIGSARILKFIAVDTESKAMIAEKEGLMSELLKSVDPAEDPALIDNALSCLIAISTSKRNKLKLVHLGAIKKLSQLLSRSNSNTSVTENVLKLLETVSSTKEGRSEICEDPACLQAVLQKVMKVTIIATEHAVMILWTVCYLFRDQKAQEVVAMANGFTKFLLLMQSNCSPAARQMSADLLKIFRVNSKSCLSCYDTKTTHIMPF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1435 389 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Lele24g1435 389 SUPERFAMILY RING/U-box 1 57 - -
Lele24g1435 389 Pfam U-box domain 1 56 IPR003613 GO:0004842|GO:0016567
Lele24g1435 389 PANTHER WDSAM1 PROTEIN 1 377 IPR045185 GO:0061630
Lele24g1435 389 CDD RING-Ubox_PUB 1 34 IPR045210 -
Lele24g1435 389 Gene3D - 213 379 IPR011989 -
Lele24g1435 389 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Lele24g1435 389 SUPERFAMILY ARM repeat 94 373 IPR016024 -
Lele24g1435 389 Gene3D - 79 212 IPR011989 -
Lele24g1435 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 252 296 IPR000225 GO:0005515
Lele24g1435 389 Pfam Neurochondrin 212 308 IPR008709 -
Lele24g1435 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 67 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1435 Lele-ChrLele24 20298903 20300072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1435 1 389 U-box Gene Family AT5G64660 53.350 7.25e-136 393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1494 21 23246299 23247534 Lele24g1435 24 20298903 20300072 hybridization
Lele22g1483 22 20590016 20591127 Lele24g1435 24 20298903 20300072 hybridization