Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1425 ATGGCTTCCATGAACTCCGCTGTTCTTGCTTCTACCTACGCCATTTCTGGTGCGGCTTCTTCTGAATTCAACACCAAGCACACTTCCATGGCGGTTTCTGCTCCCAAATTGCCGGTCATCAAGGCCCAGCAATCCTCCTCCTCGTCCGCCGCTCCACAAGGAAGAAGAGCCGCGATCTCTCTGTTAGCCGCCACTGTCTTCACTGCCGCCGCCGCCGCTTCTGCTAATGCCGGTGTCATTGAGGAATACCTAGAGAAAAGCAAGGCCAACAAGGAATTGAATGATAAGAAGAGATTAGCGACGAGTGGGGCGAATTTCGCTAGGGCTTACACGGTGGAATTTGGGACCTGCAAGTTCCCTGAGAACTTCACTGGCTGCCAAGATCTCGCGAAGCAAAAGAAAGTGCCATTCATTAGTGAAGATTTGGAGCTGGAATGCGAGGGGAAGGACAAATACAAGTGTGGATCTAATGTTTTCTGGAAATGGTGA 489 0.5092 MASMNSAVLASTYAISGAASSEFNTKHTSMAVSAPKLPVIKAQQSSSSSAAPQGRRAAISLLAATVFTAAAAASANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKYKCGSNVFWKW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1425 162 Gene3D - 78 162 IPR044907 -
Lele24g1425 162 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 162 IPR008796 GO:0009522|GO:0015979
Lele24g1425 162 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 38 162 IPR008796 GO:0009522|GO:0015979
Lele24g1425 162 FunFam Photosystem I reaction center subunit N 78 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1425 Lele-ChrLele24 20231643 20232326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1425 1 133 Calmodulin-binding Proteins AT5G64040 63.380 3.67e-55 170
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1487 21 23178701 23179381 Lele24g1425 24 20231643 20232326 hybridization
Lele22g1475 22 20523618 20524300 Lele24g1425 24 20231643 20232326 hybridization