Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1416 ATGCTTTCCAAAAGTAGCTTCATTTTCTCATCCATTTCGTCTTCATCATCGTCAGTTCGTTCTCTTCTCTTTCAAATTTGTCACTGCCCTAGCTCGTTGTATAGCTCCTCGTTACTTAGACGCCATTATCATGAATCCCGAAATATACCAGTCCCAGTATGGTGGGATTTTGAGAATTGCCACCCACCGTCTGATGCAAATGTTTACAGAATTACTCACCTCATAACGGAGGCAGTTAGAGCCAAAGGGATCATGGGTCCTCTTCAAATTAATGCATTTGGTGGAAAGAACAGTGCTGATAAGTCTCTTCTTATTGACCTTATGTATTGGGTTTCCCAAAATCCTCCTCCCGCACATTTGTTTCTAATTTCAAGTGATAAGGATTTTGCTGAAGCATTACATCATTTGAGAATGAATAACTACAATATCCTAATTGCTGGTGTAGAGACTTCTTATCTTCTCTGCAGTGTAGCAACTATAGTGTGGCACTGGAGTTCATTAATTAGAGGACAAAATCTTGATGGAAAACATTTCAATCATCCTCCAGATGGTTTGTACGGTTCTTGGTATGGTCACCATGATGCACCTCTTGAAGACACTTGCTCTGACGGAAAGCAATTTACACGTTCACAAACTGAGGAATTCCCTAAACCTATTTCAGGTTTGAACTTGCGCCCAATTCCAAAGGCAGTTGTGCGGCAGGTTCATCGGATATTGAATTTGTATCCAAATGGCATCACTTTATCATGGTTTCGAACAGAGTTGGAAAGAGCTGGTATAAACTTGGATAAAGATTACTATGGATATAAAAACTTTTCCCAGTTTCTTTCATCAGTGGCACGTGTACACCTTCAGGCTGTACCTGATAGAGGACTTATTGCACATCGCATCCCCAAAGAATCTCCAGAACCCATTGAAAGCAGTTTTGTATCATCAACAGAATTAGTTGAAAATGAGGAGTTGAATCATGTGTCTGCTTCAACAGAATTAGATGGAACTTCTGAAAAGTTAAATGCTGATGACAAATATGCTAAGACAACAAAAAGTAATGCTTTTAGGAAACATACAACTTTCTGGGGTTGGATTAAAAGTTGGTGGCCATTCGGGAAAAAATTTGGAAACACGCATAATTTGACTGCCCATGATAAAGAGCCTGAGTTATCAAATCTGAAACAGAGTGTTAGTCATTCTGAAGAGCTCCAGTCATTAGAACAGAGACAAATGGCTAGTCAATTTAAGGAGCCTGAGTTATCAGAACTGAATCAGACATTGAATCATTCTAGAAAGCCAAAGTTATTTTCTTGTAGTTCCTTTTGGAAGGAAATGAAATGTTTTGTTTTCAGCTCCAAAGGAGCAATTCTTGTCTTCCACTCAATAAGCAGGGAGGATATGGCGCTCATTTTTAAAAAGTATGGACCCCATGTTCTCCGCTCTCTTAGTGAAAATGATCTCCTTCTATTGGTGGATTTGTTAATATATGAGAAAAAATGGTTGGAGGAAAGGCCTTCTCAGACTTTTCCTTTCCGTACCATTCCAAACAGAACAACACAAAGTAATTTGCAGACTGAGAAGTCTAGAAGTGACATTTTGGCAGATGTTCAGAAACTTGTGAGTGAGATGTTGAGAGAACACCCAGATGGGTGTAATATGGGTCTAATACCAGATCGCTTTCGGAAGAAGTATGGTTATCATTTAGATGTTGGGAAGCTTGGTTATTCCAAGTTATCGCCCGTTCTACATAGTCTGCCTGGAGTGAAAACACAGCATTGTCATTTCTTTCCTGCAAATCATGGCATATATGCTTCTGATGAGGAAACTTCTATTCTCAAAACTCAAGAGAAAAAACTAAGTGATGGGGGAGTGTACCACTATTCAGAGAATGATCACAAAGGCTACCCATGGGAAGAATTAGGACCTGTTTCTGTCAGCAATTCCAATGAGAGTGACTTGGAATCAAAACCAAGGCAGGAAGCAATAGAGCTGAAGGCTGCAATTGATCCTGATTATGAACCTGATCTCTCTGATGATGATTCTTCCCAATCTCGAGGAGATAACTCCTGTTTAACTCAATCAGAGTATGATCATTTCTTTCCTGCAAATCATGGCATGTGTGCTTCTTGTAAGGAAACTTCAATTGTCAAAACTCAAGAGACAAAATTAAGTGATGTAGTGTACCACTATTCTGAGAACGAGTTCTATGCTTCGTACTCTGAAGATGATCGGAAAGACTCCCCATGGGGGGAATTAGGACCTGTTTCTGCCAGCAATTCCAATGACAGTGACCTGGAGTCAAAACCAAGGCAGGACACAATAGAGCTGAAGACCGCAATAGATCCTGATTATGAACCTGATCTCTCTGATGATGATTCTTCCGAATCTGGAGGAGATGAAACCTGTTTAACTCCGTCAGAAGAGGAAGGTGAGCCAAAACTTAAAGTGGACGACGGGGCTTTGCAAAATCTGGATTCAGTGTATGTCAGACTTGAAGATGCCGAATTGAGGAATTCCTGGAGTTCAGAACATCTGAAGTGGGGTTGGTTCCTATTACTTCATAGTGTAGAAATTATGGGATTTGGGGCAACCAAAACGAGCGTTTCCTCCTTGGCGGCTCCATCTCTTGGGGAACCAACCTGCAAGGCGGCAAACTCTGTTAGGGTCTCAGACACAAAGTTCAGTTTGAGAAGTCGGAAGTTCCTCAATAGAGCTTCAGATACGAAAATTGTTTTCACTTCACTGCAAATTCTGAGTTTTTCGATAGATAAACGCTTCACTGAAACACAAGTGACACAGTTGTTCGATAGTTGTTATTTACCTGCTGATGTCAGTGGTTATAGAATCACCCACTGCATAACAGAAGCTCTTAGGGCCAAAGGGATAAAGGGGCCGCTTCAAATCAAGGCTTTTGGTGAAGTCTTGCGACTCTTAACTGCCAATCAGGAAGCTCTCTCTTCCACTGGGATAAATCTGGACCACATTCCCAATGGTTCGTCTTGCGTAAACATTCCTGCCCATGGATCTCTTCTGGTTGAACTTATGCATTGGGTTACCAAAAATCCTCCACCAGCACATCTGTTTTTGATTACTGATAATAGGGTTTTTGCTGATATGTTGCACCGTTTAAGATTGGATAACTACAACATCTTGCTCGCAACACCAATAAGGGCTCCTAATGTCCTCTGCAATGCAGCAACTATAATGTGGCATTGGAATTCATTAATTAGAGGAGAAAATCTTGATGGAAAACACTTTAATCATCCTCCTGATGGTTTGGATGATTTGGAATTGCGTAGAGTTCCAAAGGCAGTTGTGAGGCAAGTTCAAGAAATATTAAACTCATATCCAACAGGTATCTCTGTATCAGACCTTCAAGCAGAGATAGCAAAAGCTGGTATTTTCTTGGATAAAGACTACTATGGTCATAAAGAGTTTTCTCGCTTTCTTTTGGCAATACCAAATGTACAACTTGGTCTTGGACCTGATAAATTACTTTTTTTTCATCCCATCCCCCAAAAATGTGCCGGACCCTCTGATAACAGTTCTGTATCATCAACAGCATCTGTTTATGGTGAGGTGTTGAACCTGGTGGCAACCTCAAATTTAAGTGGTGAGGTCAAAAAGGCGGTTGGGGATGCAGATCTGAAGCCATCAACAGTATCTGTTGATGTTGAGGAGTTGAACCCGCAGGCTACTTCAAAGTTAAGTGATGAGGTGGGAAAGGTTGGGGATGTGGTTAATACACATGTAACTGAGAGTCAATTGCTTCTGAAGGAGAATGAAATTCTTAGCTCTAGTGATGTAAGTCTGAGTGTCACTGAGAAAAATACTTCAGAGAATTACTCTACTGAACAAAGCAACACGGTTTCAGAAAGGAATGGATATTCAAATGATATTTCTGGGAAGTTAAAAGATGAGGACAAATATGACACATCCACAAGAAAGGAAGCTGATGCAGTTTGTCACATTCCTCTTTCTTTACCAGTTAATGAATCTGTGGTTGACAAAAGCATTGGTGAAAGCAATGGAACTTCCAGCAAAAATTTTGGCAAACGTCCAAGTTTCTTCGCTTGGATTAGCAGCTGGTGGCCATTCAGGAAAAATGGTGGAAACTCAAATAATTTGACTGATCAACCAAATGAGATGCTTAGTAATACTGAAGAGCTCAAGTTTTCAAACCTGAGCCAGGCAACCCGTCATTCTAGGGAGTCTGAGTTGTCAGATCTGAAACAAACAGCTTGTCATTCTGATGAGTCTGAGTTCACAAAACAGAAACAAACAGTTAGTCACTCTGAGGAGCCCAAGTTATCTGAACCGAGACAGACAGTGAATTATTTTGTAGAGCCTGAGTTATTTTCTAGTAGTTCCTTTTGGAGTGACATGGAATCATTTATTTTTAATGCCAGAGGATCAACTCTAATCTCCCATTGTAAAAGCAGAAATTTCAGAAGTATGGACCCCAGGTTCTTAGTTCTCGTAGTGAAAAATAATCTCCTTCAACTGGTGGATGTGTTGATATCTGAGAAAAAATGGTTGGAGGAAAGGACCTCTCTGACTTTTCCTTTCCGGGTCACTCCACAAGCTGGGAAAAACTCAGTGGGCCTATCACATGCTGCTACTGGCTTGAGATCTCTCTTTCTGAGAGAAGAAGCACGGAGCACCTTGAAAAAATCATCTGAAGGTGATAATGATAAAAGATATCAGAGTATTCCTCACACTGGAGTTTCTTCACCTGCCATTAAAAATAAGCACACTGAAAAGTCTAGAACCGACATATTAGCAGATATTCAGAAACTTGTGAGTGACATATTGAGGGAACACTCAGATGGGTATAATACCAAAACTTTTTCTGGAGAGATTGTGCCTGGAGTGAGAGTAGAGTCTTGTTACATCTTTCCCGCTGATCATCCTGCTTTTGCTTCTGACATGGAAATGTCAACTCTCAATACTTTAGCGAACAATTCAAGTGGTGCAGTGTCGAATTCGGATAGAAAGTCATCTGATTCATGCCCTGAAGATGATGGCAAAGACACTCCGTGGGAGGAATTAGGACCTGTCTCAATCAGCAATCCCAACCAGAGTGACCTGGAAATAAAATCAAGGCAAAAGGCTATAAAGCTGGAGACCTCAATCCATCCTGATTATGAACCTTCCCTTTCTGACGATGATTCTTCTGAATATGAAGGAGATAGCTCTTGTTTAACTCAATCAGAAGAGGAAGGACGATCAAAACATAATGTGCAAGACAGGGCGGCGCCCAAAGAGAAGCAAAGACCTCACAAGAGCTATTCATTTGTTGCCGAGCTGGACTCACGAAAGAAGGACGAGCTAATGGATGGAATATTACAAAATGTGAGGAAATCAGATGAGTTGAAGATGCGAAATTGA 5382 0.408 MLSKSSFIFSSISSSSSSVRSLLFQICHCPSSLYSSSLLRRHYHESRNIPVPVWWDFENCHPPSDANVYRITHLITEAVRAKGIMGPLQINAFGGKNSADKSLLIDLMYWVSQNPPPAHLFLISSDKDFAEALHHLRMNNYNILIAGVETSYLLCSVATIVWHWSSLIRGQNLDGKHFNHPPDGLYGSWYGHHDAPLEDTCSDGKQFTRSQTEEFPKPISGLNLRPIPKAVVRQVHRILNLYPNGITLSWFRTELERAGINLDKDYYGYKNFSQFLSSVARVHLQAVPDRGLIAHRIPKESPEPIESSFVSSTELVENEELNHVSASTELDGTSEKLNADDKYAKTTKSNAFRKHTTFWGWIKSWWPFGKKFGNTHNLTAHDKEPELSNLKQSVSHSEELQSLEQRQMASQFKEPELSELNQTLNHSRKPKLFSCSSFWKEMKCFVFSSKGAILVFHSISREDMALIFKKYGPHVLRSLSENDLLLLVDLLIYEKKWLEERPSQTFPFRTIPNRTTQSNLQTEKSRSDILADVQKLVSEMLREHPDGCNMGLIPDRFRKKYGYHLDVGKLGYSKLSPVLHSLPGVKTQHCHFFPANHGIYASDEETSILKTQEKKLSDGGVYHYSENDHKGYPWEELGPVSVSNSNESDLESKPRQEAIELKAAIDPDYEPDLSDDDSSQSRGDNSCLTQSEYDHFFPANHGMCASCKETSIVKTQETKLSDVVYHYSENEFYASYSEDDRKDSPWGELGPVSASNSNDSDLESKPRQDTIELKTAIDPDYEPDLSDDDSSESGGDETCLTPSEEEGEPKLKVDDGALQNLDSVYVRLEDAELRNSWSSEHLKWGWFLLLHSVEIMGFGATKTSVSSLAAPSLGEPTCKAANSVRVSDTKFSLRSRKFLNRASDTKIVFTSLQILSFSIDKRFTETQVTQLFDSCYLPADVSGYRITHCITEALRAKGIKGPLQIKAFGEVLRLLTANQEALSSTGINLDHIPNGSSCVNIPAHGSLLVELMHWVTKNPPPAHLFLITDNRVFADMLHRLRLDNYNILLATPIRAPNVLCNAATIMWHWNSLIRGENLDGKHFNHPPDGLDDLELRRVPKAVVRQVQEILNSYPTGISVSDLQAEIAKAGIFLDKDYYGHKEFSRFLLAIPNVQLGLGPDKLLFFHPIPQKCAGPSDNSSVSSTASVYGEVLNLVATSNLSGEVKKAVGDADLKPSTVSVDVEELNPQATSKLSDEVGKVGDVVNTHVTESQLLLKENEILSSSDVSLSVTEKNTSENYSTEQSNTVSERNGYSNDISGKLKDEDKYDTSTRKEADAVCHIPLSLPVNESVVDKSIGESNGTSSKNFGKRPSFFAWISSWWPFRKNGGNSNNLTDQPNEMLSNTEELKFSNLSQATRHSRESELSDLKQTACHSDESEFTKQKQTVSHSEEPKLSEPRQTVNYFVEPELFSSSSFWSDMESFIFNARGSTLISHCKSRNFRSMDPRFLVLVVKNNLLQLVDVLISEKKWLEERTSLTFPFRVTPQAGKNSVGLSHAATGLRSLFLREEARSTLKKSSEGDNDKRYQSIPHTGVSSPAIKNKHTEKSRTDILADIQKLVSDILREHSDGYNTKTFSGEIVPGVRVESCYIFPADHPAFASDMEMSTLNTLANNSSGAVSNSDRKSSDSCPEDDGKDTPWEELGPVSISNPNQSDLEIKSRQKAIKLETSIHPDYEPSLSDDDSSEYEGDSSCLTQSEEEGRSKHNVQDRAAPKEKQRPHKSYSFVAELDSRKKDELMDGILQNVRKSDELKMRN 1793
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1416 1793 Pfam NYN domain 94 158 IPR021139 GO:0004540
Lele24g1416 1793 Pfam NYN domain 933 1063 IPR021139 GO:0004540
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1271 1295 - -
Lele24g1416 1793 Gene3D - 54 165 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 736 814 - -
Lele24g1416 1793 PANTHER LIMKAIN B LKAP 34 539 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele24g1416 1793 ProSiteProfiles OST-type HTH domain profile. 529 603 IPR025605 -
Lele24g1416 1793 Pfam OST-HTH/LOTUS domain 1101 1154 IPR025605 -
Lele24g1416 1793 Pfam OST-HTH/LOTUS domain 230 291 IPR025605 -
Lele24g1416 1793 Pfam OST-HTH/LOTUS domain 530 590 IPR025605 -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1706 1763 - -
Lele24g1416 1793 ProSiteProfiles OST-type HTH domain profile. 227 298 IPR025605 -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 650 679 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 633 686 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 762 781 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1733 1763 - -
Lele24g1416 1793 Gene3D - 524 591 IPR041966 -
Lele24g1416 1793 CDD LOTUS 1099 1160 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1652 1694 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 782 802 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1554 1584 - -
Lele24g1416 1793 Pfam OST-HTH Associated domain 460 519 IPR025677 -
Lele24g1416 1793 CDD PIN_limkain_b1_N_like 50 146 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1399 1434 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1664 1678 - -
Lele24g1416 1793 CDD PIN_limkain_b1_N_like 932 1052 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1271 1308 - -
Lele24g1416 1793 CDD LOTUS 530 585 - -
Lele24g1416 1793 MobiDBLite consensus disorder prediction 1392 1434 - -
Lele24g1416 1793 ProSiteProfiles OST-type HTH domain profile. 1098 1169 IPR025605 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele24g1416 Lele-ChrLele24 20166297 20176308 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1416 53 170 C2H2 Transcription Factor Family AT5G61190 34.483 1.28e-20 97.4