Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1415 ATGATAAGGTTATCCTCAGCCATTGTAAGATGGTGTAGTAGAGCATCATCAGAACCTACTGTTTCAAGAGCTGTGTGGAACCTCTTCACGGTCGTTTTCATTAGTCTTACAACTTTAGATTTAGTGTTCGGGAACAGTTATATGGATTTGGACGATTTCCGATCAATATTGGAGTCGGCTGGTGTGGATGTATGGATGTTCATCGACACTGCAATCGACGTGGCTTCCATTGAGTACAACAACGAGTTAAAGCGTCGAAGGGATGGAATCGTTCAGCGTCTCTACGAAGCCACTTCAGCTCCGGGACGGTGTCGGAACTGCGAAGCGATTGGGCTCGAGTCCAATGGCCAGGAAATAAGCTCACCAATTGAGAAACAGAGCACTCCTGAGCTGAAAAGAGATGCCTCGCCTGTAACGCCTCACTCTATCGGTCAAGATTACGACGATTTAGATCCTTATGGAGGTCTTCTTGATGATGAACAAAAGAAGATTCAAGAGATCAAAGAGCAACTTGAGGATCCTGACCAGCCTGAAGATTATGTGGTGGAGTTGCTACAAATTCTAGCGGACATGGATATTACATTCCAAGCACTAAAGGAGACGGATATTGGGAGGCACGTTAATAGGTTGCGCAAGCATCCATCCAATGATGTTCGGAGATTGGTGAAGCTACTTGTCAGGAAATGGAAGGAGATTGTAGATGAATGGGTGAAGGTAAATCAACCAGGCGATGTTGCTTCTGCCGTCATGGCTAATGGAGATTCTTCGCCTATGCAGAAAAACGCCCAAAACGGGCACAGCCAGGTTCCTGATTTTGCATACTCGCCTAATCCGCACTATGGGAGTTCTGGGTCAGAGCGAAACTATTCAGAAGCTGAACCAAAGTCAAAGACAGTTTCTCAAAGAGCGCCACCAAAACCAGCAACCCCAGTGCCCATTCCTGCTCCTCAAAACGTATGA 960 0.4635 MIRLSSAIVRWCSRASSEPTVSRAVWNLFTVVFISLTTLDLVFGNSYMDLDDFRSILESAGVDVWMFIDTAIDVASIEYNNELKRRRDGIVQRLYEATSAPGRCRNCEAIGLESNGQEISSPIEKQSTPELKRDASPVTPHSIGQDYDDLDPYGGLLDDEQKKIQEIKEQLEDPDQPEDYVVELLQILADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKVNQPGDVASAVMANGDSSPMQKNAQNGHSQVPDFAYSPNPHYGSSGSERNYSEAEPKSKTVSQRAPPKPATPVPIPAPQNV 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1415 319 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 157 244 IPR035441 -
Lele24g1415 319 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 162 241 IPR035441 -
Lele24g1415 319 SMART TFS2_5 164 235 IPR003617 GO:0005634
Lele24g1415 319 MobiDBLite consensus disorder prediction 278 297 - -
Lele24g1415 319 MobiDBLite consensus disorder prediction 248 319 - -
Lele24g1415 319 MobiDBLite consensus disorder prediction 115 146 - -
Lele24g1415 319 Pfam TFIIS helical bundle-like domain 184 233 IPR017923 -
Lele24g1415 319 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 48 310 IPR044790 -
Lele24g1415 319 MobiDBLite consensus disorder prediction 305 319 - -
Lele24g1415 319 CDD TFIIS_I 161 234 - -
Lele24g1415 319 MobiDBLite consensus disorder prediction 252 271 - -
Lele24g1415 319 ProSiteProfiles TFIIS N-terminal domain profile. 159 236 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1415 Lele-ChrLele24 20159534 20162336 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lele24g1415 Med26 3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1474 21 23117785 23119722 Lele24g1415 24 20159534 20162336 hybridization
Lele22g1463 22 20448178 20450152 Lele24g1415 24 20159534 20162336 hybridization