Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1412 ATGGACTTTGACGAGTATGATTACTTGGAAAAGACAGTGGAGGAGCAGGGAGATCAGGATTTGACGAAGGGCAAGGAGAAAAGCGGTAAGAGTGAGAGGGCTTACCGGAAGCGTGACGTCAACGATGATGTTGACGGTGAAGACAAGAAAAGCAAGAGGTCCAGGGGCGACGACGAGAATGGGTCGAGGAAAGATCGTGAGGACCGCGACAGAGAACGGTCTAGTCGAGAAAAGGAACGGCATAGGAGTAGCAGAGACAGAGAGAGGGACGGTGATAGGGAGCGAGAGAGGAGGAGCAGTAAGGAGAGAGGGAGGGAGAAGGAGAGAGACAAGGAGAGGGAAAGAGAGAGAAGGGATAAGGACAAGGACAAGGAGAGGGAGAGAAGAGATAGAGACAGGGAGAGGGAAAAAGAACGGGAGAGAAGGGAGAGAGAGAGGGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATCGAGATAGAGAAAGAGAATTGGAGACTAGAGATAGCCGGAGATTTAGGGATAAGAAAGAGGCCGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACAGAGAGAGATGTTTATGAATTCTTCTCGAAAGCTGGAAAGGTGAGGGATGTCCGCTTGATCATGGATAGGAATTCAAGGCGATCTAAAGGAGTTGGGTACGTTGAATTTTATGACGTGATGTCAGTGCCAATGGCAATTGCCCTCTCTGGCCAACTGCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAATCTTGTTCAGTCTAATACTACGAGTGGAGCTGCAGGGGTAGTAGGACCATATGGAGCGGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAGGGTCAGCTGAGAGAGATTTTTGAGCCGTTTGGTCCAGTAGAGCTTGTTCAGCTACCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTCGTACAATTTGCTAATCTCGAACATGCCAAGACGGCTCAGAGTTTGAACGGAAAATTAGAGATTGCTGGTAGGACTATCAAGGTTTCATCAGTAACAGATCATGTTGGAGGCCAAGATACGACTGCAAAATCTGCAGATTTGGATGATGATGAAGGTGGATTGTCATTGAATGCTCAATCAAGAGCAATGCTTATGGCAAAGTTGGATCGGTCTGGTATTGCTACAAGCATTGCAGGGTCCATGGGTGGTGTGCCTCTGGTGAATGGCTCAGCCCCTGCCCAGCAGGCTATTAGTTTGCCAGCTGGGGGTCCTGGTATAGTACCTGCAACAGCTCTCCCAACAGCCGTTATGCCTAACCCAGCAGCAGAGCCAGTTGGAACCCCCAGCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACTACTGAGACAGAACCAGATTTTGATGAGGATATCAAGGAGGATGTAGCAGAAGAATGTTCTAAATTTGGTCGGGTGAACCATATTTATGTTGACAAAAATAGTGCAGGCTTTGTGTATCTACGGTTTGAAACAGTGCAAGCAGCTAGTGGTGCTCAACAGGCAATGCACTTGAGATGGTTTGCCCGCAGGTTGATTTCAGCAGTGTACATGCAACCTCAGGTATATGAAGCGAAGTTTAAAGGAGAAGCTTGA 1695 0.4802 MDFDEYDYLEKTVEEQGDQDLTKGKEKSGKSERAYRKRDVNDDVDGEDKKSKRSRGDDENGSRKDREDRDRERSSREKERHRSSRDRERDGDRERERRSSKERGREKERDKERERERRDKDKDKERERRDRDREREKERERREREREERERSRRSRSRSDRDRERELETRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVVGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFVQFANLEHAKTAQSLNGKLEIAGRTIKVSSVTDHVGGQDTTAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSMGGVPLVNGSAPAQQAISLPAGGPGIVPATALPTAVMPNPAAEPVGTPSECLLLKNMFDPTTETEPDFDEDIKEDVAEECSKFGRVNHIYVDKNSAGFVYLRFETVQAASGAQQAMHLRWFARRLISAVYMQPQVYEAKFKGEA 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1412 564 SUPERFAMILY RNA-binding domain, RBD 295 553 IPR035979 GO:0003676
Lele24g1412 564 CDD RRM1_RBM39_like 194 266 - -
Lele24g1412 564 SUPERFAMILY RNA-binding domain, RBD 186 273 IPR035979 GO:0003676
Lele24g1412 564 MobiDBLite consensus disorder prediction 1 192 - -
Lele24g1412 564 MobiDBLite consensus disorder prediction 10 192 - -
Lele24g1412 564 Gene3D - 465 563 IPR012677 -
Lele24g1412 564 Coils Coil 128 155 - -
Lele24g1412 564 FunFam Splicing factor, CC1-like protein 465 564 - -
Lele24g1412 564 ProSitePatterns Rrf2-type HTH domain signature. 408 426 IPR030489 -
Lele24g1412 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
Lele24g1412 564 Gene3D - 291 386 IPR012677 -
Lele24g1412 564 CDD RRM3_RBM39_like 469 551 - -
Lele24g1412 564 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 560 - -
Lele24g1412 564 FunFam Splicing factor CC1-like 279 384 - -
Lele24g1412 564 TIGRFAM SF-CC1: splicing factor, CC1-like family 76 560 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele24g1412 564 Gene3D - 118 281 IPR012677 -
Lele24g1412 564 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Lele24g1412 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 262 IPR000504 GO:0003723
Lele24g1412 564 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 367 IPR000504 GO:0003723
Lele24g1412 564 FunFam Splicing factor CC1-like 120 278 - -
Lele24g1412 564 CDD RRM2_RBM23_RBM39 297 369 - -
Lele24g1412 564 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 388 488 IPR029123 -
Lele24g1412 564 SMART rrm1_1 194 266 IPR000504 GO:0003723
Lele24g1412 564 SMART rrm1_1 471 548 IPR000504 GO:0003723
Lele24g1412 564 SMART rrm1_1 296 369 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1412 Lele-ChrLele24 20134102 20140259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1412 267 368 Eukaryotic Initiation Factors Gene Family AT4G34110 33.010 1.60e-06 49.3