Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1410 ATGGTGGCGAATCCTACACACAAACTTGTTGATGAACACAACACAAACCCTAACGTTTCTTCTTCGTCGTCGCTGCCAATTCTGTTTCCCGGTATGGATAGGGACAGGGAGATGTCTGAGATGATCTCTGCTTTGACGCACGTCGTTGCCGGAGATATTCCTGGTGATTCCAGTGAGATTTCTGCCGGGGGCGTCCGTGATGGTGACGGTGGAGGTGAAGGGGGCTCTGTTAGATTAAACTCGCCGTCGGATTCAACGACAACGCCATCTTCTTCATCCTGTTCTTCGTCTTACGGTGGTAGCTCTGTTTTGAAGAGAAGCAGGGAAGATAATACTACAGGCTCTTCTTCCACTGCTATTATTCGAACAGTTGCAGGAGAAGGTTCAAGAGGAGAGAGAGTAGTGCAAATGGGGAATGCAGTGTATGAATATAGCTGTAATACAGAGAATGTGAGGGGCTCAGAAGAAGGAAGAAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGCAAGTGGGCAGCTGAAATCAGAGATCCTTTTAAAGCTGTCCGTGTTTGGTTGGGCACTTTCGACACGGCGGAGGCGGCTGCCCGGGCCTATGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCCAAGCTCAATTTCCCCGAAAATGTCAGACTCCGGCAACCCCCTCCGGCGCCTCAGGCGACAACGACGGCGGCGACCCATTTGAGAGGTTCGGGTTCTGCGAGTACCTTTTTGTCCATTCCGACGTCCACCGAACCGATTGTTCATACTGAAACCCTTCACCACAGCCACCCTCTCGTGAGTTCTCAGCCGACGGCGTCCAGTGATTTTTATAGCTACTCGCAGTTTTCGGAGTTTCCCATGAATTTTTACGATCAAATGGTTATGCCATCTTCAATAGCTCATCATTTGCAGTCGTCCACGTTGCCGTCAGCTTTCTCATCGTCGTCGTCATCTTCTTCTTCTATGTTGGCATCTTCTATTAGCTCTCAGCATCAGCAAGGAGGTTTACCGTTTCCGGGTTGGGTCATACCAGAAAAGGGTCCGGAAAGTGGTTCCGAATACGTACCATCAGCATGGTCATCTTCGGGTCATAGTTCTTCTTCCTCTGTATGA 1128 0.5027 MVANPTHKLVDEHNTNPNVSSSSSLPILFPGMDRDREMSEMISALTHVVAGDIPGDSSEISAGGVRDGDGGGEGGSVRLNSPSDSTTTPSSSSCSSSYGGSSVLKRSREDNTTGSSSTAIIRTVAGEGSRGERVVQMGNAVYEYSCNTENVRGSEEGRRKYRGVRQRPWGKWAAEIRDPFKAVRVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRLRQPPPAPQATTTAATHLRGSGSASTFLSIPTSTEPIVHTETLHHSHPLVSSQPTASSDFYSYSQFSEFPMNFYDQMVMPSSIAHHLQSSTLPSAFSSSSSSSSSMLASSISSQHQQGGLPFPGWVIPEKGPESGSEYVPSAWSSSGHSSSSSV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1410 375 Gene3D AP2/ERF domain 159 219 IPR036955 GO:0003700|GO:0006355
Lele24g1410 375 MobiDBLite consensus disorder prediction 1 28 - -
Lele24g1410 375 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Lele24g1410 375 MobiDBLite consensus disorder prediction 328 375 - -
Lele24g1410 375 PANTHER DNA-BINDING DOMAIN 115 323 IPR044808 GO:0003700|GO:0009873
Lele24g1410 375 MobiDBLite consensus disorder prediction 220 244 - -
Lele24g1410 375 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Lele24g1410 375 MobiDBLite consensus disorder prediction 9 27 - -
Lele24g1410 375 MobiDBLite consensus disorder prediction 359 375 - -
Lele24g1410 375 MobiDBLite consensus disorder prediction 226 244 - -
Lele24g1410 375 MobiDBLite consensus disorder prediction 78 119 - -
Lele24g1410 375 FunFam Ethylene-responsive transcription factor 2 159 218 - -
Lele24g1410 375 Pfam AP2 domain 160 209 IPR001471 GO:0003700|GO:0006355
Lele24g1410 375 MobiDBLite consensus disorder prediction 52 119 - -
Lele24g1410 375 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Lele24g1410 375 CDD AP2 160 219 IPR001471 GO:0003700|GO:0006355
Lele24g1410 375 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Lele24g1410 375 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1410 Lele-ChrLele24 20108499 20110499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1410 168 306 AP2-EREBP Transcription Factor Family AT5G64750 52.083 3.90e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele24g1410 AP2 2.3e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1410 24 20108499 20110499 Lele24g1410 24 20108499 20110499 ECH
Lele23g0547 23 4013582 4015354 Lele24g1410 24 20108499 20110499 ECH
Lele21g1465 21 23055134 23056898 Lele24g1410 24 20108499 20110499 hybridization
Lele22g1458 22 20401556 20403381 Lele24g1410 24 20108499 20110499 hybridization