Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1372 ATGAATTCTCCAACCACACAGTTTGTATCCTCAAGAAGGATGGGTGTTTACGATCCAATCCAACAGATTAATATGTGGGGAGAGAATTTCAAAAGTAATGGTAATTTAAGTGCCTTAATTGGTGAAGCAGATGGGAAGTTAATTAATCAGGATGCTTCTTATAACACATTGGGTACGTCCAAGATGTATGGCCAAGAAGCTAATAAACCTACTGATAAGATACAAAGACGTCTTGCACAAAATAGGGAGGCTGCTCGTAAGAGTCGTCTGCGTAAAAAGGCCTATGTGCAGCAATTAGAATCAAGTCGTTTAAAGCTGATCCAGATAGAGCAAGAACTCAACCATGCAAGACAACAGGGTTTATATATGGGCGAGGCATTGGATTCTAATAATCTGGGTTTTGCTGGAACTGTTAATTCAGGCATTACGAACTTTGAGATGGAGTATGGACACTGGGTTGAAGAGCAAAATAGACTAACCTGTGAACTAAGAGGTGCTTTAAATGCTCATATTAGTGACATGGAGCTCAGGATACTTGTAGATAGTATAATGAATCACTATTTTGAACTCTATCGAAAGAAGGCCGCTGCTGCAAAAGCAGATGTTTTCTATGTGATGTTTGGCATGTGGAAAACTACAGCTGAGCGGTTTTTCATGTGGATTGGAGGCTTTCGCCCCTCTAAGCTTCTAAAGGTCATTGTCCCTCTGATTGAACCTTTGACAGAGCAACAACGGTTTGATATCTCTAACCTTGAACAATCTTGCCAGCAAGCAGAAGATGCCCTTTCTCAAGGTATGGATAAACTCCAGCAAACGCTTGGAGATACTATAGCAGCTGGACCGCTAGTTGAAGGAACTTATATTCCTCAGATGGCTGCTGCAATGGAGAAAATGGAAGCTCTCGTGAGCTTTGTAAACCAGGCTGATCATCTTCGTCAGGAAACATTGCAGCAAATGTTTAGGATCCTAACGATCCGTCAGGCTGCTCGATACTTGCTGACTCTAGGCGAATATTTCAAACGCCTACGATCCTTGAGCTCACTTTTGGCTAATCGTCCTCGGGAACCGGCTTAG 1074 0.4236 MNSPTTQFVSSRRMGVYDPIQQINMWGENFKSNGNLSALIGEADGKLINQDASYNTLGTSKMYGQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQIEQELNHARQQGLYMGEALDSNNLGFAGTVNSGITNFEMEYGHWVEEQNRLTCELRGALNAHISDMELRILVDSIMNHYFELYRKKAAAAKADVFYVMFGMWKTTAERFFMWIGGFRPSKLLKVIVPLIEPLTEQQRFDISNLEQSCQQAEDALSQGMDKLQQTLGDTIAAGPLVEGTYIPQMAAAMEKMEALVSFVNQADHLRQETLQQMFRILTIRQAARYLLTLGEYFKRLRSLSSLLANRPREPA 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1372 357 SUPERFAMILY Leucine zipper domain 73 115 IPR046347 GO:0003700|GO:0006355
Lele24g1372 357 SMART brlzneu 69 129 IPR004827 GO:0003700|GO:0006355
Lele24g1372 357 FunFam BZIP family transcription factor 72 121 - -
Lele24g1372 357 ProSiteProfiles DOG1 domain profile. 142 352 IPR025422 GO:0006351|GO:0043565
Lele24g1372 357 PANTHER TRANSCRIPTION FACTOR TGA9 1 355 - -
Lele24g1372 357 Pfam bZIP transcription factor 71 101 IPR004827 GO:0003700|GO:0006355
Lele24g1372 357 Gene3D - 72 123 - -
Lele24g1372 357 Coils Coil 248 268 - -
Lele24g1372 357 Pfam Seed dormancy control 160 234 IPR025422 GO:0006351|GO:0043565
Lele24g1372 357 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 71 113 IPR004827 GO:0003700|GO:0006355
Lele24g1372 357 Coils Coil 92 119 - -
Lele24g1372 357 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 76 91 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1372 Lele-ChrLele24 19771876 19776543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1372 1 357 Calmodulin-binding Proteins AT5G65210 65.217 6.45e-178 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele24g1372 DOG1 8.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1372 24 19771876 19776543 Lele24g1372 24 19771876 19776543 ECH
Lele23g0585 23 4377367 4381201 Lele24g1372 24 19771876 19776543 ECH
Lele21g1429 21 22755560 22759468 Lele24g1372 24 19771876 19776543 hybridization
Lele22g1420 22 19998679 20003334 Lele24g1372 24 19771876 19776543 hybridization