Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1361 ATGGCTGCTACTCTTGCTTGGAGGCTTGGTTCCAATAATGGCGGCAGCCTTGCTGCTAATGATATGTGCACCTTTCATGCTCTATGCTCTGTGCTCTGTGTTGCTGTAATAAATACGCTCATCATGGTATTAAAAGAAAGAAATGGCGAGGGAAACATTCCAGATTCAGAGCCCCCAACTCCGCACTCTGTTTTGAAGATGGGATTGAGAGAGCGCGGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTAGCCCAATGCATTGAGCAGCTGCGACAGAGCTCATCCTCCGCACAAGAGAAGGAGTACTCCTTGAAGCAGTTATTGGAGCTTATTGATATGCGCGAAAATGCGTTCAGTGCTGTTGGATCTCATTCTCAGGCAGTACCAGTGCTTGTTTCTCTTCTCCGATCTGGTTCTTTGAGTGTGAAGATTCAGGCAGCGACTGTTTTGGGCTCCCTTTGTAAAGAAAATGAGCTAAGAGTGAAAGTCTTGCTTGGAGGATGCATTCCCCCATTGCTTGGGCTACTAAAATCCAGTTCAGCCGAAGGTCAAGTTGCTGCTGCAAAGACTATTTTCGCTGTCTCTCAAGGCGGCTCAAAAGACCATGTTGGATCAAAAATTTTTGCAACTGAAGGAGTAGTACCTGCGCTGTGGGAACAACTTCAGAAGGGGCTGAAGACTGGAAATGTAGTTGATGGTTTATTGACCGGAGCCTTGAAAAACCTGTCCAGTAATACTGAGGGATTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAATGAAGTTATTGACAACAGGGCATCCTAGCACTTTAGCTAACGTGTGCTTCTTACTTGCCAGCATGATGATGGAGGATGCATCTGTTTGTTCAAAACTGTTGACTTCAGAGGCGACAAAGCAACTCCTCAAATTATTAGGCCCTGGTAATGATGCCATTATTAGAGCTGAAGCAGCTGGTACTCTGAAATCTTTGTCTTCTCAGTGCAAAGAAGCAAGGCGTGAGATAGCTAATTCTAGTGGCATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCAAAAGAGTTCATGCAGGGTGAGCATGCTCAATCATTGCAGGAAAATGCTATGTGTGCTCTAGCTAACATCTCTGGTGGTTTGTCTTACGTGATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCACCTCAGCTTCTCAAATTGCAGATACACTAGGGGCTTTGGCTTCAGCTCTTATGATATACGATAAAAAGGCCGAATCTACTAGGACATCAGATCCGCTGGTAGTTGAGCAAACATTGCTCAAGCAATTCAAATCTCAGTCGCCGTTTCTTGTGAAGGAAAGAACAATTGAAGCCCTGGCTAGTTTGTATGAAAATCCCGTACTGTCAATTAAACTTGCAAATTCATATGCAAAACATTTGCTAGTTGGATTAATAACGATGACTGTTAATGAAGTACAAGATGACCTTATAAGGGCTCTCCTTACATTGTGCAACAATGAAGGCAGTCTTTGGCGTGCCCTTCAGGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTAGGGCTCTCATCAGAACAACAGCAAGAGTGTGCAGTTGCTCTGCTATGCCTTCTATCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCATTAGTTCAAATTTTGGAGACAGGATCAACAAAAGCAAAGGAAGACTCAGCAAAGATCCTTACAAACCTGTGCAATCACAGCGAAGATATACGTGCTTGTGTGGAGAGTGCTAATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGGAGCCCAAATGGGAAGGAGATAGCGGCGAAAACCTTAAATCACTTAATTCATAAATCTGATACCACCACAATCAGCCAGCTTACAGCACTATTGACAAGTGATCTACCTGAATCTAAGGTCTATGTTTTGGATGCTTTGAGAAGTATGCTGTCAGTAGCCCCTCTTAGCGACCTTCAACGAGAAGGTAGCGCTGCAAGTGATGCAATTGATACGATGATAAAATTAATGAGCTCTACCAAAGAAGAAACTCAGGCTAAGTCAGCATCAGCTCTAGCAGGCATCTTTGAAATGAGGAAAGACGTGCGTGAAAGCAGTGTTGCTGTTAAAGCTCTTTTGTCAGCCATGAAGTTGCTTAATGTCGAATCTGAAAGTATCCTAATAGAATCTTCAAGGTGCCTTACGGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGCTGTTGCTAGTGATGCTTTACTCCCCTTAGTTGCATTAGCAAATTCTTCTACTTTGGAAGTTGCAGAGTTGGCAACATGTTCGGTGGCTAATCTTATTTTAGATAGTGAGATTTCAGAGAAAGCTGTTGCCGAAGAAATTATCATCCCAGCTACCAGAGTATTACGTGAAGGTACAATATCTGGAAAAACACATGCAGCATCAGCAATTGGTCGGCTCATACATTCTCGGCAAGTTGATTATTCTATAACTGAATGTGTGAATCGTGCTGGGACAGTACTTGCTCTGGTTTCCTTCCTGGATTCTGCTATTAATGGATCAGTTTCCACATCAGAGGCTATAGAAGCACTTGCTGTTCTGTCCAGGTCGGAACAGAACAGTGCACATATTAAACCAGCATGGGCTGTATTGGCTGAATTCCCTGAAAGCATAAACCCAATAGTGTTGTCTATTGCTGATTCAACACCAGTGTTTCAGGATAAAGCTATTGAGATATTATCCCAGTTATGCAGGGATCAGCCTGTTGTTCTTGGAAACAATGTTGTTGCGGCCTCAGGATGCTTGTGTTCATTGGCTAAAAGGGTAATTGGTACCAAAAATATAAAGGTTAAAATTGGGGGAGCTGCACTTCTGATTTGTGCTGCCAAAGTAAACCACCGGAGACTGGTGGAGGAACTCAATCAATCAAACTTGTGTTGTGATCTTGTTCACTCTCTTTCTTCTACACCATCTTGTTTTGCAAACCGGGGTGAAGAAAACAAGGAACTCATTAATATTTTAATACATAGAAAAGAAGATGCCAATGTTGGTGTATCCAATACGGGTACTGCCAGTATATCTGATGCCAACTTAGCCATATGGTTATTGTCCATTCTAGCTTGTCATGATGAAAAATGCAAAATAGCTATAATGGAGGCTGGAGCAATTGACATTCTCACTGAAAGAATCTCAGACTGTTACTCACAATATACCCAGATGTGTTATGTTATTGATTGTCGCTTGTATGTGGTTTTCTTGATGGATTATAAAGAAGATAGTAGCATGTGGATTTGTGCATTGTTGTTAGCTGTACTATTTCAAGATAGAGATATCATCAGAGCAAATGCAACCATGAAATCTATACCAGCTGTTGCCAGTTTATTGAAGTCAGAAGAATTAGCTAACAGATATTTTGCAGCACAATCAATAGCGAGCCTGGTCTGTAATGGTAGCAGGGGCACACTACTGTCTGTCGCGAACTCAGGGGCTGCAAGTGGGCTAATCTCCTTACTTGGCTGCGCTGACATTGATATACAAGACCTTCTGGACCTGTCAGAGGAATTCTCTTTGGTTCGTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTCAGAGTTGATGACATTAGGGTTGGTTCCACTTCGCGGAAGGCGATACCGGCACTTGTTGATCTGCTCAAACCAATTCCAGATCGCCCAGGAGCACCTTTTTTAGCTCTTGGACTTCTAACTCAGCTCGCCAGAGATTGCCCATCTAATAAGATTGTAATGGTAGAATCTGGGGCCCTGGAGGCAATTACAAAGTATCTTTCATTGGGTCCCCAAGATGCCACTGAAGAAGCTGCTACTGATCTACTGGGAATTCTTTTTGACAGTGCTGAGATACGGAGACATGAGGCAGCATTTGGTGCTGTTACGCAACTTGTAGCTGTGTTGCGTTTAGGGGGAAGAGGTGCAAGGTACAGCGCTGCCAGAGCCCTGGAAAATTTGTTCTCTGCTGATCAGATTAGGAATGCAGAGACTGCCCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAACACTGGTTTAGAGAAGGAGCAGCATGCTGCAATTGCTACATTGGTTAGGCTCCTAAGTGAAAATCCTTCGAGAGCACTAGCTGTTGCTGATGTGGAAATTAATGCAGTGGATGTGCTTTGCAGGATCCTTTCCTCGAATTGTTCATTGGACCTCAAAGGTGACGCTGCTGAATTATGTTGTGTTCTGTTTGGAAATACACGGATTAGGTCCTCAGTGGCTGCTGCACGCTGTGTTGAACCTCTAGTTTCTCTCCTTGTAAGCGAGTTTAGTCCTGCCCAGCATTCAGTGCTCCGTGCACTGGATAGGCTTGTTGATGACGAGCAATTGGCTGAACTAGTTGCTGCTCATGGTGCCATTATTCCTCTTGTTGGTCTTCTGTATGGTAGGAATTATTTGCTCCATGAGGCCATTTCTAGAGCTCTGGTTAAGTTAGGGAAAGACAGACCTTCTTGTAAAATGGAAATGGTCAAAGCTGGAGTTATTGAAAGCATACTGGACATTCTCCATGAAGCACCTGATTATCTGTGTGCAGCATTTGCAGAATTGCTGCGTATATTGACCAATAATGCCAGCATAGCTAAAGGGATGTCTGCTTCTAAAGTGGTTGAGCCCCTATTTATGTTGCTGACGAGACAAGAATTTGGGCCTGATGGACAGCACAGTGTGTTGCAGGTTTTGGTTAATATCTTGGAACATGCACAATGTCGTGCTGACTATACATTGACATCCCACCAAGCTATTGAACCACTTATCCCCTTGCTCGATTCTCCAATACCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTGCTTTTGGAAGAACACCTTCAGAAGGATCCAGCTACACAGCAGGTAATTGGTCCTCTTATTCGAGTTCTTGGTTCTGGTATCCACATATTGCAGCAGAGAGCTGTGAAGGCGCTGGTTAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAGGGTGGTGTTGTTGAACTTTCGAAAGTGATACTGCATGCTGATCCTTCACTTCCTCATGCTTTATGGGAATCTTCTGCTTCTGTTTTGTCAAGTATTCTGCAATTCAGTTCTGAATTCTACTTGGAAGTGCCTATTGCCGTGTTGGTAAGATTGCTTCGTGCTGGCTCAGAGAGCACTGCTATTGGCGCATTAAATGCTCTTCTAGTGTTGGAAAGCGATGATGGTACCAGTGCAGAAGCAATGGCTGAATGCGGCGCCATAGAGGCTCTCTTAGAGCTTCTAAGATCTCATCAGTGCGAGGAAACTGCTGCTAGACTACTGGAAGTATTGCTAAACAACGTCAAGATCAGAGAATCGAAAGCTACCAGATCAGCCATAGTACCATTATCCCAGTACCTCTTGGATCCACAAACCCAAGGACAGCAGGCAAGGTTACTGGCAACTTTGGCTCTTGGCGATCTATTTCAGAATGAGAGTCTTGCTCGAACAAGTGATGCAGTTTCAGCATGTCGTGCTTTGGTGAATGTGCTTGAAGATCAACCAACAGAAGAAATGAAAGTTGTAGCTATATGTGCTCTGCAGAACCTTGTGATGCATAGTCGGTCAAATAGAAGAGCTGTTGCTGAGGCTGGTGGTGTACAGGTTGTATTGGATCTGATAGGTTCTAGTGATCCTGAAACATCTCTTCAGGCTGCAATGTTCGTTAAACTTCTCTTCTCTAATAATACAATTCAAGAATACGCTTCAAGTGAAACGGTCAGAGCAATAACTGCTGCTATTGAAAAGGATTTATGGGCTACTGGAAGCGTGAATGATGAGTATTTGAGAGCCTTGAATGCTCTTTTTAGCAACTTCCCACGATTGAGAGCAACTGAGCCAGCAACACTTAGCATTCCCCATCTGGTTACATCATTAAAGACGGGCTCAGAGGCCACTCAAGAAGCTGCATTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCATGCCCAGCAGAAGTCTCAAGAGCTCAGTCGGTAGCAGCCGCAGATGCTATTCCTTTGCTACAGTACTTAATCCAGTCTGGTCCTCCTCGGTTTCAAGAGAAGGCTGAATTCTTATTGCAGTGTTTGCCTGGCACATTAGTTGTCATCATAAAGCGTGGTAACAACATGAAGCAGTCAGTTGGAAACCCAAGTGTTTACTGACTTGGTGATATGGGTTTAACTAGGCTAGATTCAGATCCTTATAGTTTGTCGAATGTGGTCCATCTTGTTCAACCTGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGCCCTCCTAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAAAGTTCATTTGGGAAAGTGACAATCCAAATCGATCGCGTGGTAATGCTGGGATCTGTTGCTGGAGAATACACTCTTCTACCGCAAAGTAAAAGTGGTCCCCCAAGGAATTTAGAGATAGAATTCCAGTGGTCTAACAAATGA 6591 0.4388 MAATLAWRLGSNNGGSLAANDMCTFHALCSVLCVAVINTLIMVLKERNGEGNIPDSEPPTPHSVLKMGLRERGSSMEDPDGTLASVAQCIEQLRQSSSSAQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLSVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGSKDHVGSKIFATEGVVPALWEQLQKGLKTGNVVDGLLTGALKNLSSNTEGFWNATIQAGGVDILMKLLTTGHPSTLANVCFLLASMMMEDASVCSKLLTSEATKQLLKLLGPGNDAIIRAEAAGTLKSLSSQCKEARREIANSSGIPALINATIAPSKEFMQGEHAQSLQENAMCALANISGGLSYVISSLGQSLESCTSASQIADTLGALASALMIYDKKAESTRTSDPLVVEQTLLKQFKSQSPFLVKERTIEALASLYENPVLSIKLANSYAKHLLVGLITMTVNEVQDDLIRALLTLCNNEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSTKAKEDSAKILTNLCNHSEDIRACVESANAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTTTISQLTALLTSDLPESKVYVLDALRSMLSVAPLSDLQREGSAASDAIDTMIKLMSSTKEETQAKSASALAGIFEMRKDVRESSVAVKALLSAMKLLNVESESILIESSRCLTAIFLSIKENRDVAAVASDALLPLVALANSSTLEVAELATCSVANLILDSEISEKAVAEEIIIPATRVLREGTISGKTHAASAIGRLIHSRQVDYSITECVNRAGTVLALVSFLDSAINGSVSTSEAIEALAVLSRSEQNSAHIKPAWAVLAEFPESINPIVLSIADSTPVFQDKAIEILSQLCRDQPVVLGNNVVAASGCLCSLAKRVIGTKNIKVKIGGAALLICAAKVNHRRLVEELNQSNLCCDLVHSLSSTPSCFANRGEENKELINILIHRKEDANVGVSNTGTASISDANLAIWLLSILACHDEKCKIAIMEAGAIDILTERISDCYSQYTQMCYVIDCRLYVVFLMDYKEDSSMWICALLLAVLFQDRDIIRANATMKSIPAVASLLKSEELANRYFAAQSIASLVCNGSRGTLLSVANSGAASGLISLLGCADIDIQDLLDLSEEFSLVRYPDQVALERLFRVDDIRVGSTSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEAITKYLSLGPQDATEEAATDLLGILFDSAEIRRHEAAFGAVTQLVAVLRLGGRGARYSAARALENLFSADQIRNAETARQAVQPLVEILNTGLEKEQHAAIATLVRLLSENPSRALAVADVEINAVDVLCRILSSNCSLDLKGDAAELCCVLFGNTRIRSSVAAARCVEPLVSLLVSEFSPAQHSVLRALDRLVDDEQLAELVAAHGAIIPLVGLLYGRNYLLHEAISRALVKLGKDRPSCKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGMSASKVVEPLFMLLTRQEFGPDGQHSVLQVLVNILEHAQCRADYTLTSHQAIEPLIPLLDSPIPAVQQLAAELLSHLLLEEHLQKDPATQQVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVVELSKVILHADPSLPHALWESSASVLSSILQFSSEFYLEVPIAVLVRLLRAGSESTAIGALNALLVLESDDGTSAEAMAECGAIEALLELLRSHQCEETAARLLEVLLNNVKIRESKATRSAIVPLSQYLLDPQTQGQQARLLATLALGDLFQNESLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMHSRSNRRAVAEAGGVQVVLDLIGSSDPETSLQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWATGSVNDEYLRALNALFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYXLGDMGLTRLDSDPYSLSNVVHLVQPVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKVGKSSFGKVTIQIDRVVMLGSVAGEYTLLPQSKSGPPRNLEIEFQWSNK 2196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1361 2196 Gene3D - 1417 1729 IPR011989 -
Lele24g1361 2196 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1229 1273 IPR000225 GO:0005515
Lele24g1361 2196 SUPERFAMILY ARM repeat 240 632 IPR016024 -
Lele24g1361 2196 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 559 601 IPR000225 GO:0005515
Lele24g1361 2196 Gene3D - 1036 1195 IPR011989 -
Lele24g1361 2196 Pfam Armadillo/beta-catenin-like repeat 127 157 IPR000225 GO:0005515
Lele24g1361 2196 Pfam Armadillo/beta-catenin-like repeat 548 587 IPR000225 GO:0005515
Lele24g1361 2196 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 54 2196 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lele24g1361 2196 SMART arm_5 548 588 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 291 332 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1599 1640 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1217 1260 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 795 835 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 117 158 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 159 199 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 840 882 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1890 1930 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1472 1512 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1514 1554 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1344 1385 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 669 709 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 334 383 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1262 1303 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1763 1802 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 248 289 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 1431 1471 IPR000225 GO:0005515
Lele24g1361 2196 SMART arm_5 590 630 IPR000225 GO:0005515
Lele24g1361 2196 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1858 1901 IPR000225 GO:0005515
Lele24g1361 2196 SUPERFAMILY ARM repeat 77 932 IPR016024 -
Lele24g1361 2196 Gene3D C2 domain 2110 2195 IPR035892 -
Lele24g1361 2196 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2063 2193 IPR035892 -
Lele24g1361 2196 SUPERFAMILY ARM repeat 1613 2060 IPR016024 -
Lele24g1361 2196 Coils Coil 320 340 - -
Lele24g1361 2196 SUPERFAMILY ARM repeat 1354 1687 IPR016024 -
Lele24g1361 2196 Pfam C2 domain 2064 2165 IPR000008 -
Lele24g1361 2196 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1413 1647 - -
Lele24g1361 2196 Gene3D - 635 1034 IPR011989 -
Lele24g1361 2196 Gene3D - 440 634 IPR011989 -
Lele24g1361 2196 Gene3D - 1831 2062 IPR011989 -
Lele24g1361 2196 ProSiteProfiles C2 domain profile. 2044 2173 IPR000008 -
Lele24g1361 2196 SUPERFAMILY ARM repeat 954 1192 IPR016024 -
Lele24g1361 2196 Gene3D - 74 430 IPR011989 -
Lele24g1361 2196 Gene3D - 1210 1416 IPR011989 -
Lele24g1361 2196 SUPERFAMILY ARM repeat 1211 1396 IPR016024 -
Lele24g1361 2196 Gene3D - 1730 1830 IPR011989 -
Lele24g1361 2196 CDD C2 2065 2167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1361 Lele-ChrLele24 19661490 19672194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1361 480 657 U-box Gene Family AT3G46510 30.435 2.27e-07 54.3