Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1351 ATGTATCTCAGGGGGCCTGATCGTTTCTTGGTTTTCTTTTGTCTGAATCATCAAGGGAAGTCGTCATCTGCATTGGCTTTGATGTCAGCTCTTCACCTATGCTGGTGCATAGGGTCATCACTTCATTCCCAGCGTAAGTCGTCGAATTGTAATGAACCTACACAGAAAATAATTAGCTGCAAAAGGACAGCGTCTATTAGGTCGACATCATCGAGAAATCCGTTGGCTGGAGCATCGAAGGAAGATATTGATGACAGTGGAAGTGACTTCATTGAAGAATTGTATATGATTGCTGGAAGTCATTCCTCCACCCTTGACAGACTGTATGCCTGGGAGAGAAAACTTTATGAAGAAGCGAGTGAGTTGCTCCGCAAAGTGTATGATCGTAAATGTGAGCAGCTGAGGCATCAATATGCCAAAGATGAGAGTACTCATGTCATAGACAAAACCCGGTCTGTCGGGAAGGACGTGCATTCGCGGATACAAGTGGCCATCCGATCAGTAGATTCAATATCCAAGCGAATCGAGCAGATGAGGGATGAAGAGTTGCACCCTCAACTTGTGGAGCTAATTCATGGTAAATTGGTCGGGATGTGGAAGGCCATGCTAGAGTGCCATCATGCGCATTACCATTCGAGAAGCTCGAGTGGAGCCTTGCAAGAAGAAGCGTACAGAGAGATCTTGACTCAATTGCTCGAAGAAATCGAATGCTGTGGGTTGAGCTTTGCTAACTGGACCAACAGCCACACGTCCTACATCGAATCTCTCAATGCATGGCGCCAAAACTGCATACTAAAACCTAGGTCCAAGAGCCGAAGGCCTTTCTCGCCACGTCGAGTTCTTGCTCCTCCCATATTTGTTCTTTGCCGCGATTGGTGTGCTGGGATCAAGTCTTTGCCGTCCAAGGCACTAAGCGATGCGATCAGAAGCTTCTTGTCCAATCTGCAGCAGCTGATAGGGCAGCAGAAAGATGATGGACTGCTTAATAAGAAGCAGATTTCTTCTTCAGGTCAAGGAAGCTACGAGGAAACACCTAGCAAAATGAAGGAGGATGGTGGTGGTGGTGGTGATGATAACGACTCTGCAAATTTGTGCTGCATAAAGACGAGCTTGAGCAAGGTTCTTGAGCGGCTGACAATTTTCAGGGGCATCGTTGAAGATGATACACATGGCATCCATTCATTGGATAGACTTCATCAAAGATTGGAATTATTGGAGTTGACGAGTGGTAGTCTGAATAACATAACACCATATTTGATGGATCCTTACAGTGAAGAGTTGATGAAAGCACTCAAACCTTTCAACCCTCCTTCATCTTCTCCTTCTCCTTCTCCTTCTCCCCTCAATTCCTCCATCCAAACAAGTCCCATCAGGCTCAACCAGCTCACACCATCTCAAATTCAAGAAATTCAATCCCAATTCCACACCAAACGTCGCCGTTTGACTCAGAAATCCCTCCCCATGAAGCAACCTGGTAATTCTTCTAAAACAACAAAACTCTACCGAGGAGTCAGACAGAGACATTGGGGAAGATGGGTCGCCGAGATCCGACTTCCCAAGAACCGTGCCCGACTCTGGCTCGGCACCTTCCATACTGCAGAAGAAGCTGCTTTAGCCTACGACAACGCAGCTTATAAGCTCAGAGGAGATTTCGCTCGGCTCAATTTCCCTCACTTTCGCCACCACGGTGCTCATGTGATTTCTGAATTCGGCGATTACAAGCCTCTTCACTCATCTGTGCACGCCAAGCTCCAAGCCATATGTGAAAGCTTGGCACTCAGTTCCCAGAAACAGGGGAATGCAGATCAGCCTCATCATCAGAACACACAGGATTGTACTACTCTCTCCAACTTAGCCTCGTCTTCGTCCGATGAACCGGAGATTACTTACTTGGATTTCCCGGATTCTAAAGTGGATGAAACAGAGTTTGTTGGTTTGGACAGGTATCCTTCCATTGAGATTAATTGGTCTGCTATCTGA 1980 0.4667 MYLRGPDRFLVFFCLNHQGKSSSALALMSALHLCWCIGSSLHSQRKSSNCNEPTQKIISCKRTASIRSTSSRNPLAGASKEDIDDSGSDFIEELYMIAGSHSSTLDRLYAWERKLYEEASELLRKVYDRKCEQLRHQYAKDESTHVIDKTRSVGKDVHSRIQVAIRSVDSISKRIEQMRDEELHPQLVELIHGKLVGMWKAMLECHHAHYHSRSSSGALQEEAYREILTQLLEEIECCGLSFANWTNSHTSYIESLNAWRQNCILKPRSKSRRPFSPRRVLAPPIFVLCRDWCAGIKSLPSKALSDAIRSFLSNLQQLIGQQKDDGLLNKKQISSSGQGSYEETPSKMKEDGGGGGDDNDSANLCCIKTSLSKVLERLTIFRGIVEDDTHGIHSLDRLHQRLELLELTSGSLNNITPYLMDPYSEELMKALKPFNPPSSSPSPSPSPLNSSIQTSPIRLNQLTPSQIQEIQSQFHTKRRRLTQKSLPMKQPGNSSKTTKLYRGVRQRHWGRWVAEIRLPKNRARLWLGTFHTAEEAALAYDNAAYKLRGDFARLNFPHFRHHGAHVISEFGDYKPLHSSVHAKLQAICESLALSSQKQGNADQPHHQNTQDCTTLSNLASSSSDEPEITYLDFPDSKVDETEFVGLDRYPSIEINWSAI 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1351 659 Pfam AP2 domain 501 549 IPR001471 GO:0003700|GO:0006355
Lele24g1351 659 MobiDBLite consensus disorder prediction 431 453 - -
Lele24g1351 659 Gene3D AP2/ERF domain 500 558 IPR036955 GO:0003700|GO:0006355
Lele24g1351 659 MobiDBLite consensus disorder prediction 329 359 - -
Lele24g1351 659 PRINTS Ethylene responsive element binding protein signature 523 539 IPR001471 GO:0003700|GO:0006355
Lele24g1351 659 PRINTS Ethylene responsive element binding protein signature 501 512 IPR001471 GO:0003700|GO:0006355
Lele24g1351 659 MobiDBLite consensus disorder prediction 473 497 - -
Lele24g1351 659 Coils Coil 161 181 - -
Lele24g1351 659 FunFam Ethylene-responsive transcription factor 2 499 558 - -
Lele24g1351 659 CDD AP2 499 558 IPR001471 GO:0003700|GO:0006355
Lele24g1351 659 MobiDBLite consensus disorder prediction 329 343 - -
Lele24g1351 659 PANTHER UNCHARACTERIZED 44 338 - -
Lele24g1351 659 SMART rav1_2 500 563 IPR001471 GO:0003700|GO:0006355
Lele24g1351 659 SUPERFAMILY DNA-binding domain 500 558 IPR016177 GO:0003677
Lele24g1351 659 ProSiteProfiles AP2/ERF domain profile. 500 557 IPR001471 GO:0003700|GO:0006355
Lele24g1351 659 Pfam Protein of unknown function (DUF632) 55 316 IPR006867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1351 Lele-ChrLele24 19570203 19578417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1351 421 659 AP2-EREBP Transcription Factor Family AT4G39780 48.864 6.91e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele24g1351 DUF632 1.5e-75 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1404 21 22522484 22523200 Lele24g1351 24 19570203 19578417 hybridization
Lele22g1397 22 19773558 19774250 Lele24g1351 24 19570203 19578417 hybridization