Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1350 ATGAGCCCACGTGGACACCATCCTTTTGGCTTCCAACACCCATGGCTTCACCACTCCTCTGCTCAGAAGACGGCTGGCAAGGACTCTTCTGCCATTTCCCCCATTCCTACTGTTTTTCAAGACATGACGCAGCAGAATGTGGTGGTCTCTGACGCCAATTCCAGAATTAACCTTGCTTTCACCGCCGCTGTCTCCAACTCCTTCAATTTCACCACCGCCCCTCCCCGCGGCGGCGCCGGCTTCATCTCCATCTCAAGGAATAAGAAGTTCTTGAAGACCGTCGACATCAATGGAGCCGCCAAAATCAATTCCTGGGTTGACTCCATGCGTGCCTCTTCCCCCACCCACCACCATTCCAGTTCTCTCGCCACCTCTCCTTTTGACCCAGAACACAACTCTTGGATCCTTCATCACCCATCTGCATTAGATATGTTTGAGCAAATCATAGAGGCTTCCAGAGGAAAGCAAATAGTCGTGTTTCTCGACTACGATGGCACGCTCGCCCCCATCGTCGACGACCCTGATCGCGCTTTCATGTCCGATGCGATGAGGAAGACGGTGAGAAACCTGGCGAGGTGTTTTCCGACTGCCATAGTAAGCGGAAGATGCAGAGACAAGGTGTACAACTTTGTTCGCTTGGCAGAGCTATATTATGCAGGAAGCCATGGAATGGACATTAAAGGCCCGACTAGAATTTCTAAATACAATAAAGACAGCAAAGCGATTCTGTTTCAGCCTGCTTGTGAATTTTTACCCATGATAGACAAGGTTTATCAACTGTTAGTTGAGAAAACAAGCTCAACTCCAGGAGCTAACGTGGAGAACAACAAGTTCTGTGTATCTGTTCATTTTCGCTGTGTTGATGAAAAGAAATGGAGCGAGCTGGCGAACCAAGTTAGATCCGTGTTAAAGGAGTACCCAAAGCTTCGTCTTACTCAAGGAAGAAAGGTACTTGAGATTCGTCCCCCGATTAAATGGGACAAAGGAGAAGCCCTGGAGTTTTTGTTAGATTCACTTGGTTTTGCCAACTGTAGCGACGTGTTCCCTGTTTACATTGGCGACGATCGATCCGATGAAGATGCATTCAAGAAACTAAGAGAGATAGGACAAGGGCATGGCATTCTTGTCTCCAAATTTCCGAAAGATACGAGTGCATCTTACTCTTTGCAAGAACCCGAGGAGGCAAGTGATGGATTTTCTTCAGCGATTAGTGGAGTGGAAGAGGGTTTCGGTGAGGGCACGTTCCAGGGTGTAAATGACATATATGTACATCTCTATACCCTGCAAAAATAA 1293 0.4772 MSPRGHHPFGFQHPWLHHSSAQKTAGKDSSAISPIPTVFQDMTQQNVVVSDANSRINLAFTAAVSNSFNFTTAPPRGGAGFISISRNKKFLKTVDINGAAKINSWVDSMRASSPTHHHSSSLATSPFDPEHNSWILHHPSALDMFEQIIEASRGKQIVVFLDYDGTLAPIVDDPDRAFMSDAMRKTVRNLARCFPTAIVSGRCRDKVYNFVRLAELYYAGSHGMDIKGPTRISKYNKDSKAILFQPACEFLPMIDKVYQLLVEKTSSTPGANVENNKFCVSVHFRCVDEKKWSELANQVRSVLKEYPKLRLTQGRKVLEIRPPIKWDKGEALEFLLDSLGFANCSDVFPVYIGDDRSDEDAFKKLREIGQGHGILVSKFPKDTSASYSLQEPEEASDGFSSAISGVEEGFGEGTFQGVNDIYVHLYTLQK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1350 430 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 78 397 IPR044651 GO:0004805|GO:0005992
Lele24g1350 430 Pfam Trehalose-phosphatase 160 392 IPR003337 GO:0003824|GO:0005992
Lele24g1350 430 CDD HAD_TPP 158 394 - -
Lele24g1350 430 FunFam Trehalose 6-phosphate phosphatase 253 407 - -
Lele24g1350 430 SUPERFAMILY HAD-like 158 395 IPR036412 -
Lele24g1350 430 TIGRFAM T6PP: trehalose-phosphatase 155 394 IPR003337 GO:0003824|GO:0005992
Lele24g1350 430 Gene3D - 159 389 IPR023214 -
Lele24g1350 430 FunFam Trehalose 6-phosphate phosphatase 157 242 - -
Lele24g1350 430 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 159 367 IPR006379 -
Lele24g1350 430 FunFam Trehalose 6-phosphate phosphatase 247 323 - -
Lele24g1350 430 Gene3D - 239 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1350 Lele-ChrLele24 19541524 19546121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1350 146 365 Trehalose Biosynthesis Gene Families AT1G70290 28.879 3.31e-10 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1403 21 22500861 22503771 Lele24g1350 24 19541524 19546121 hybridization
Lele22g1395 22 19742911 19745912 Lele24g1350 24 19541524 19546121 hybridization