Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1328 ATGCATCTTATCACGGGAAAACTCGACCACCAAATAGTTTCGTCGTGCTCCAGCGAAATCGAGAATTCTAATTTCTCTAACCTCATCCTCGATCCTTCGTCCTCCACGCTATACTCTTCATTCACTCTCGCACTTTCGGCCTTCATTCCTGTTTATCTTTCCCTGCCCTTCCCCCTCTCTCTACTGTCAGAGAGAGCGAAGCGGCCCAGGTTAAGGGAAAGGCAATCACTAACAGAAGCTTGTAAGATTTTGACAAAAGTACTTCTTTTGTCACTTGAACTTGGGGTATATTGGATGGCTGTTACACCTTTTGGAAGTACATCTGTTGCACAATGGGGAGTTCGCCCTCAATCTTCCTTGAGGTCCTGTTTGATTGGCAAGAGTGTGTCATCTGGATTCAATCTGTCAGGCAGGGTTAGTTTTATGGCTTCTGCGAGTTCAAGTTTTTGTTCTCGGGGTTCCATGCACCTGCTGTTTGGTGTGGGTTTTTCTCAGACATCACATCGTCATCAGGGATCAAGGTTGATAGTTAGAGCAGATACTGATTACTATTCTGTCCTTGGGGTGTCAAGAAATGCCAGTAAACCTGAAATTAAGAGTGCTTATCGTAAACTTGCCCGGAGTTATCACCCAGATGTGAACAAAGAAGCTGGAGCAGAACAGAAATTTAAGGAAATCAGCAATGCGTATGAGGTCTTATCAGATGATGAGAAGAGATCCATTTATGACACATACGGCGAGGCTGGGCTTAAAGGTTCTGGAATGGGCATGGGAGATTTCAGTAATCCATTTGATCTGTTTGAGACGCTGTTTGAGGGCATGGGGATGAATCGTGGCATGAACAACAGAGGCTCTTGGAATGGAGCTGTTGATGGTGAAGATGAATATTACAGTCTTGTCTTGAACTTTAAAGAAGCAGTTTTTGGAGCAGAAAAAGAGATAGAGATAAGCCGACTAGAGAATTGTGGAGCTTGCAATGGTACAGGGGCTAAGCCGGGGACCATGCCAACCAAATGTAGCACCTGTGGAGGCCAAGGTCGGGTTGTCTCATCAACAAGGACTCCCTTAGGTATTTTCCAGCAGTCAATGATATGCTCTGCATGTAATGGAACTGGAGAAATTTCAACGCCTTGCAATACATGTTCTGGGGACGGTCGAGTGAGGAGAACAAAGCGGATAAGTCTGAAAGTTCCACCTGGTGTGGACTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGGAATGCTGGAAGACGTGGTGGTTCTCCCGGCGACCTCTTTGTTGTCATCGAAGTCATTCCAGATCCTGTCCTCAAGCGTGATGACAATAACATCCTATACACTTGTAAGGTGTCATACATTGATGCGATCTTGGGGGTTACAATCAAGGTTCCTACCGTAGACGGCACGGTTGATCTAAAAGTCCCAGCCGGGACCCAACCCAACACAACACTTGTCATGGCAAAGAAAGGTGTTCCCTTTCTGAATAAAAGCAATATGAGGGGAGATCAATTAGTTCGTGTACAAGTTGAAATACCTAAAAGACTCAACAGTGAAGAAAGGAAGCTTATTGAGGAGCTTGCTGATTTAAGCAAAGGCAAGGCTGTGGCAAGTAGATGA 1617 0.4539 MHLITGKLDHQIVSSCSSEIENSNFSNLILDPSSSTLYSSFTLALSAFIPVYLSLPFPLSLLSERAKRPRLRERQSLTEACKILTKVLLLSLELGVYWMAVTPFGSTSVAQWGVRPQSSLRSCLIGKSVSSGFNLSGRVSFMASASSSFCSRGSMHLLFGVGFSQTSHRHQGSRLIVRADTDYYSVLGVSRNASKPEIKSAYRKLARSYHPDVNKEAGAEQKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGMNRGMNNRGSWNGAVDGEDEYYSLVLNFKEAVFGAEKEIEISRLENCGACNGTGAKPGTMPTKCSTCGGQGRVVSSTRTPLGIFQQSMICSACNGTGEISTPCNTCSGDGRVRRTKRISLKVPPGVDSGSRLRVRNEGNAGRRGGSPGDLFVVIEVIPDPVLKRDDNNILYTCKVSYIDAILGVTIKVPTVDGTVDLKVPAGTQPNTTLVMAKKGVPFLNKSNMRGDQLVRVQVEIPKRLNSEERKLIEELADLSKGKAVASR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1328 538 FunFam Chaperone protein dnaJ A6 chloroplastic 179 282 - -
Lele24g1328 538 SUPERFAMILY HSP40/DnaJ peptide-binding domain 290 445 IPR008971 GO:0006457|GO:0051082
Lele24g1328 538 ProSiteProfiles Zinc finger CR-type profile. 309 390 IPR001305 GO:0031072|GO:0051082
Lele24g1328 538 Gene3D - 432 537 - -
Lele24g1328 538 CDD DnaJ 182 235 IPR001623 -
Lele24g1328 538 FunFam Molecular chaperone DnaJ 314 390 - -
Lele24g1328 538 ProSitePatterns Nt-dnaJ domain signature. 223 242 IPR018253 -
Lele24g1328 538 CDD DnaJ_zf 322 385 IPR001305 GO:0031072|GO:0051082
Lele24g1328 538 FunFam Putative Mitochondrial DnaJ chaperone 367 427 - -
Lele24g1328 538 CDD DnaJ_C 293 515 - -
Lele24g1328 538 ProSiteProfiles dnaJ domain profile. 182 246 IPR001623 -
Lele24g1328 538 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 141 532 - -
Lele24g1328 538 Pfam DnaJ C terminal domain 297 512 IPR002939 -
Lele24g1328 538 Gene3D DnaJ domain 179 283 IPR036869 -
Lele24g1328 538 SUPERFAMILY HSP40/DnaJ peptide-binding domain 437 523 IPR008971 GO:0006457|GO:0051082
Lele24g1328 538 SUPERFAMILY Chaperone J-domain 178 276 IPR036869 -
Lele24g1328 538 SMART dnaj_3 181 238 IPR001623 -
Lele24g1328 538 Gene3D - 322 385 - -
Lele24g1328 538 Pfam DnaJ domain 182 243 IPR001623 -
Lele24g1328 538 PRINTS DnaJ domain signature 238 257 IPR001623 -
Lele24g1328 538 PRINTS DnaJ domain signature 202 217 IPR001623 -
Lele24g1328 538 PRINTS DnaJ domain signature 218 238 IPR001623 -
Lele24g1328 538 PRINTS DnaJ domain signature 184 202 IPR001623 -
Lele24g1328 538 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 309 388 IPR036410 -
Lele24g1328 538 Gene3D - 292 427 - -
Lele24g1328 538 TIGRFAM DnaJ_bact: chaperone protein DnaJ 182 528 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele24g1328 538 FunFam Chaperone protein dnaJ 1, mitochondrial 432 538 - -
Lele24g1328 538 Hamap Chaperone protein DnaJ [dnaJ]. 179 535 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lele24g1328 538 Pfam DnaJ central domain 322 385 IPR001305 GO:0031072|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1328 Lele-ChrLele24 19351855 19357952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1328 183 245 C2H2 Transcription Factor Family AT1G74250 44.928 9.07e-10 59.3