Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1292 ATGGCACTTTTATTACTGTTTATGTTCCACTTCTTGCTTCTTCTTCTTGCCCCTACTCTCATTTCTTCTTATCCACTTCAAGATCCTGAACTTGTCTTCCAACAAGTTGAGAGAAGCATCAATGCTTCGAGGAGAAATCTGGGGTTCGGATCTTGTGGAACAGGCAACCCCATTGATGACTGTTGGAGATGCGATCCCAACTGGCACCGCAATCGCCGGCGTCTTGCCGACTGTGCCATCGGCTTCGGCAGGCACGCCGTCGGAGGAAGAGACGGCCCAACATACGTCGTCACCGACCCCAGCGACAACCCCATGAACCCTAAACCTGGAACTTTAAGATATGGCGTCATCCAAGAAGAACCCTTATGGATCATATTCGAAAGAGACATGAACATCAAGCTCAAAATGGACCTCCTCGTCAATTCCCACAAAACAATCGACGGCCGAGGAGCCACTGTCCACATCGCCGCAGGACCTTGTATCAAAATACAGCGACAGAACAACATCATCATTCATAGCTTGCACATCCACGACTGCATAAGAGGAAATTCTGGGTTTGTAAGGGTATCACCTCGTCGTTATAGGTTCAGTTCGAGGTCGGACGGCGATGGGGTTTCGATCTCCGGCGCGACGAATGTGTGGGTGGATCATTGCTTCTTGTCAAGGTGCTTCGATGGATTGATCGATGTGGTTCATGGATCAACGGCGGTCACCATTTCGAACAATTACATGGCCCACCATGAGAAAGTGATGCTTCTGGGACACAGCGATTCTTATGAGAAGGACCGGAATATGCAGGTCACCGTCGCCTACAATCATTTCGGAGAAGGGCTTGGGGGAAGAATGCCCAGATGCAGGTTTGGGTACTTTCATGTGGTGAACAACGATTACACTCATTGGAAACATTATGCAATAGGAGGGAGCTCGAATCCCACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCATATGATGGTGAACACAAAGAGGTGACAAAACATTTTGGGGCATCGCAAAGTGAGTGGAAGAGATGGAATTGGAAATCGGAAGGAGATATGATGTTGAATGGGGCATTCTTCAGATCATCTGGCGAAGAAGCAGCTTCTTCTGTGTATAGTAAGACTTTGAGTTTGGCGGCAAGACCATCGGAGTTTGTGAGCTCAATGACCTCAGAAGCTGGCCCTCTGAATTGCAGAAGGGCCCCATTCTGCTGA 1215 0.4856 MALLLLFMFHFLLLLLAPTLISSYPLQDPELVFQQVERSINASRRNLGFGSCGTGNPIDDCWRCDPNWHRNRRRLADCAIGFGRHAVGGRDGPTYVVTDPSDNPMNPKPGTLRYGVIQEEPLWIIFERDMNIKLKMDLLVNSHKTIDGRGATVHIAAGPCIKIQRQNNIIIHSLHIHDCIRGNSGFVRVSPRRYRFSSRSDGDGVSISGATNVWVDHCFLSRCFDGLIDVVHGSTAVTISNNYMAHHEKVMLLGHSDSYEKDRNMQVTVAYNHFGEGLGGRMPRCRFGYFHVVNNDYTHWKHYAIGGSSNPTIFSQGNRFLAPYDGEHKEVTKHFGASQSEWKRWNWKSEGDMMLNGAFFRSSGEEAASSVYSKTLSLAARPSEFVSSMTSEAGPLNCRRAPFC 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1292 404 Pfam Pectate lyase 136 320 IPR002022 -
Lele24g1292 404 Gene3D - 55 397 IPR012334 -
Lele24g1292 404 PANTHER PECTATE LYASE 18-RELATED 27 400 IPR045032 GO:0030570
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 375 398 IPR018082 -
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Lele24g1292 404 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Lele24g1292 404 SUPERFAMILY Pectin lyase-like 56 395 IPR011050 -
Lele24g1292 404 SMART amb_all 129 326 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1292 Lele-ChrLele24 18928502 18931270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1292 5 404 Polysaccharide Lyase AT5G63180 65.842 0.0 540