Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1278 ATGGACAGTGGTTTCTCTTCTCCGCGACGCGACGCTTTTCCAGCTGGTCTACGTGTTCTCGTCGTTGATGATGACCCAACATGGATCAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACAACATGTGGTTTAGCAAGGGAGGCTCTGAACTTGCTTCGTGAAAGAAAAGACGGATATGACATTGTTATCAGTGATGTAAACATGCCGGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGACTTGAAATGGATCTTCCTGTTATAATGATGTCGGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTCCAACATGGAGCATGTGATTATCTCCTCAAGCCGATTCGGATGAAGGAACTACGAAACATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGGCAAGAGAATTTGAAGGCCATGAAGTCTTTGAGGGCCTTCATTTAATGACAAATGGATCAGATCAGTCTGAAGATGGGATGTCGTTTGCCTTTGAAGATATGACTTCCATGAAGAAAAGAAAAGACCTTGATAACAAACATGATGACAAAGAATTTGGGGATCCATCTTCCACCAAGAAAGCTAGAGTGGTTTGGTCTGTGGATCTTCACCAGAAATTTGTCAAAGCTGTCAATCAGATTGGATTTGACAAAGTTGGCCCCAAAAGAATTCTGGATCTGATGAATATTCCTTGGCTGTCAAGAGAAAATGTTGCCAGCCATTTGCAGAAATACCGCCTCTATTTGAGTAGGTTGCAGAAAGAAAACGATCAGAGGTCTTCCTCAAGTGGGACCAAGCCTTCAGAGTTTCCTCCAAAAGACACTGCTGGAAATTTTGGATTATTTCAGAACTCAACACACCGGCAGCAAAATGATGTTGCAGTTGACAGCTACAAATATTCAGATGTAACATTGCAGAGTCATGCCTCTGAGACCAAGATTCATGGCGACGGTGATCTCAAGGCAATTGTTTCGGATTCCACGGCAGAAAAAAGAAGAGCTTTGTCTGGTGGAAGCATTCCTGATACAAAGGTAAGTTCCCAGATAAATCTTAACCATTCTTCTTTTGGACCTCTTGAGTCAGAAGGAAGAAGGCATGCAGTATTTAATTGCACCATCCCATCAACACAGTACACATGGAGTGAAACTCTAGAAATGCCACTCAAGAAAGAACACAAGTCGTTTCTTCAATTAGAAGACAGCTTCAGTCAGTTACCTTTACACGTCACGCAGAACCCGATTAAGGTTGACCAATCACATTCAATTGCTTCAGTTAGTTCCAACCCTTCTATCACAGAGGGAGAGATTGTTGCCTCTATCGAAGCTAAGCCGATGTATGCTGATTGCAAAAGTGATTATGCCAGTCCTGTGAGTTCAATAGGGAGTGTAGTGGACACATTTCCTACTCAGTCCAAGAGCCTTATGGAGAATGGTCAACTTTCAGAACCTACTTCAACTAAGAATTTGGACATGAAAACTCAGGGATTCAATCTAGGCTACAATTCTGACCCGGAATTTCACCCCGAGAACCTCATTTTGGAAGGCAAGGTGGATTCGCTACTGTTGGACAAGGACTTGCAATTCTATTATTGGCTGCAGAGTGAATGCTATAATATGAACTGGGGATTGGAGAATATAGGAATGCCAGAGTATTATGATCCAGGCCTTGTTGCAGAACTTTCAAGTCACCTACATGATTCAGCAGATTATACTCTTGTAGATCAAGGCCTATTCATAGCATAA 1758 0.4243 MDSGFSSPRRDAFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEVFEGLHLMTNGSDQSEDGMSFAFEDMTSMKKRKDLDNKHDDKEFGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNIPWLSRENVASHLQKYRLYLSRLQKENDQRSSSSGTKPSEFPPKDTAGNFGLFQNSTHRQQNDVAVDSYKYSDVTLQSHASETKIHGDGDLKAIVSDSTAEKRRALSGGSIPDTKVSSQINLNHSSFGPLESEGRRHAVFNCTIPSTQYTWSETLEMPLKKEHKSFLQLEDSFSQLPLHVTQNPIKVDQSHSIASVSSNPSITEGEIVASIEAKPMYADCKSDYASPVSSIGSVVDTFPTQSKSLMENGQLSEPTSTKNLDMKTQGFNLGYNSDPEFHPENLILEGKVDSLLLDKDLQFYYWLQSECYNMNWGLENIGMPEYYDPGLVAELSSHLHDSADYTLVDQGLFIA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1278 585 MobiDBLite consensus disorder prediction 258 287 - -
Lele24g1278 585 FunFam Two-component response regulator 195 258 - -
Lele24g1278 585 Gene3D - 17 180 - -
Lele24g1278 585 SMART REC_2 17 129 IPR001789 GO:0000160
Lele24g1278 585 MobiDBLite consensus disorder prediction 259 274 - -
Lele24g1278 585 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Lele24g1278 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 307 IPR045279 GO:0009736
Lele24g1278 585 SUPERFAMILY CheY-like 16 141 IPR011006 -
Lele24g1278 585 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Lele24g1278 585 CDD REC_typeB_ARR-like 19 133 - -
Lele24g1278 585 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Lele24g1278 585 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Lele24g1278 585 Gene3D - 195 258 - -
Lele24g1278 585 FunFam Two-component response regulator 17 176 - -
Lele24g1278 585 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1278 Lele-ChrLele24 18743044 18747262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1278 11 265 Response Regulator Gene Family AT2G25180 53.030 8.15e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele24g1278 Response_reg 2.2e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1278 24 18743044 18747262 Lele24g1278 24 18743044 18747262 ECH
Lele21g1322 21 21595188 21599250 Lele24g1278 24 18743044 18747262 hybridization
Lele22g1319 22 18891546 18895939 Lele24g1278 24 18743044 18747262 hybridization