Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1259 ATGAGTTTGCTCTATGTAGTTGGATTTGGCCTAAAGTTGGGGCATCTTCTTTTGGCGCTTTGTTGCTGGATTTTATCAGTCGTATACATCTACTGGTTCAACAACGGAGGAATTATGGAAACCAAGGTTGGTTTTCTCGGTGGTGTCGGCAAGATGGGGCTCAGGTGGTGGGAGAAGATCTCAGGTAATAGTTGTAAGATTCATCAACACTACTATCAGTGTATTGGGTCCAAGAAAGTTCGGAGAACTCTGTGGAGAAAGCTTTTGCAGGCATGGGTACTGGGCTGGACCTTGGTATCTTTGTGGATCTTTTGTTTCGTGACCTTTCAAGCTACTGAGAAGAGGAAAGAAACTCTAGCAAGTATGTGTGATGAAAGATCAAGGATGCTTCAGGATCAGTTTAATGTTAGTATGAACCATATCCAAGCCATGTCGATTCTCATCTCAACCTTCCACCATGCCAAGTCCCCTTCTGCAATCGATCAGAGAACATTTGCTAGGTACACAGAACGAACTGCTTTTGAGAGGCCCCTTACCAGTGGTGTTGCTTATGCTGTGAGGGTGCTTCATTCTGAAAGGGAACAATTCGAGAAGCGACAAGGTTGGACCATTAAGAGGATGGATACTCTTGAGCAGAACCCTATTCATGAGGATGACTATGCTCCTGAGGCATTGGAGCCTTCCCCAGTTCGAGAAGAATATGCTCCTGTCATTTTTGCACAGGAAACAATTTCCCATGTCATTTCTGTTGATGTGCTGTCCGGAAAGGAAGATCGTGAAAATGTTTTGCGTGCTAGAGAGTTAGGGAAAGGAGTTCTAACTGCTCCTTTTAGGCTGCTCAAAACAAATCATCTAGGAGTTATCCTCACTTTTGCAGTCTACAACACGGATCTTCCATCAAATGCAACGCCAAATGAAAGGATTCAAGCGACAAATGGGTATCTCGGTGGCGTCTTTGATATTGAGTCATTAGTTGAAAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTGATTGTTAATGTGTATGATACTACTAATCATACCCACCCTATTCCCATGTATGGTTCAAACGTATCAGATGATGGATTCTATCATGTTAGCTCCCTGAACTTTGGAGATCCTTTCCGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCTCCATGGCCATGGTTGGCAATTGCTACATCAATTGGCATCCTTGTTATTGCGCTCCTTGTAGGGCAGATTTTTCATGCTACTGTGAATCGAATTGCTAAAGTGGAGGATGATTACCGTAAGATGATGGAACTTAAAAAGCGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTGGCCACTGTTTCTCATGAGATCAGAACACCGATGAATGGTGTTCTTGGAATGTTGCACATGCTTATGGACACAGATCTAGATGTGACACAGAAAGAATATGTCAGAACAGCACAGGGTAGTGGAAAAGCTCTAGTGTCACTTATAAATGAGGTTCTGGACCAGGCAAAGATTGAATTTGGTAAGCTTGAGCTCGAGGCAGTGCTATTTGACATACGAGCAGTTTTGGATGATGTGTTGTCACTATTCTCTGAGAAATCTCAAGAAAAAGGAGTAGAGTTGGCAGTGTATATCTCAGATAAGGTTCCTGAACAGCTAGTGGGCGATCCAGGAAGGTTTCGACAAATAATTACAAATCTCATGGGCAATTCAATTAAGTTCACGGACAAAGGACACATATTTGTCACTGTCCATCTTATTGAGGAAGTTGTCAATTCAATCGAAGTTGCAACATCAAAGAATACTTTGAGTGGCTTTCCTGTTGCTGACAGATGTCAAAGTTGGAAAGGATTCAGTTCTGTTAATCAAGAGGGACCTCTGGGTTCTTTCTCTTCATCTTCCGCCTCTGATCGCATTACTCTTATTGTATCTGTTGAAGATACAGGCGAAGGAATTCCTATAGAAGCCCAATCCCGCATCTTCACTCCATTCATGCAGGTTGGTCCATCTGTCTCCAGGAAACATGGGGGAACAGGTATTGGGCTAAGCATTAGCAAGTGCTTGGTTGGCCTCATGCATGGGGAAATTGGATTTGTGAGCATACCGAAGGTTGGATCTACTTTCACATTTACAGCTGTCTTCACCAATGAATCCCCTAGTTCAACTGCGGGTAAAACTCAGCAAATTAACAACCAACCTAACCTTGCATCCTCAGAATTTCAGGGCATGAATGCACTTGTTATAGACCCTAGACCCGTCAGAGCTAAAGTGTTGAAATATCACATTAAACGGCTTGGAATTCATGTTGAAATAGCTTCAGATTTAAATCAAGGTTTGTCTGTCATAAGCAATGGGGATGTAGTTATTAATATGATCCTAGTTGAACATGAAGTCTGGGATAGCGATTCTGGTGTTTCATCTCAGTTTACCAATAACATGAGGAAAATTGATCTCGGCATTCCTCCGAAGCTGTTCATTCTTGTTAATTCTAGTAGCTCTTCCAGAACAAGTTCCGTAACATTGGGTGTTCATAGTCCAACTTTCATTGTAAAACCTCTGAGAGCAAGCATGCTTGCTGCTACACTACAGCGAGCCATGGGCCTTGGGAACAAGGGGAATCCTCGAAATGGGGAGCTTCCAAGTTTGTCTCTCCGCCATCTTTTGCGTGGGAGGAAAATCCTTATTGTAGATGACAATAGTGTGAACCGAACAGTAGCAGCTGGAGCTTTAAAAAAGTATGGAGCTGATGTGGTCTGTGTTAACAGTGGAATAGATGCCATCTCTATGCTGAAGCCGCCCCATCAATTTGATGCCTGTTTTATGGATATTCAAATGCCAGAAATGGATGGGTTTGAAGCTACTCGGAGGATTCGGGAGATGGAACACCATGTAAACATAGGAGAAGTGCCTGTGGAAACGTTGGAGAATACTTCAAACTGGCATTTACCCATTTTGGCTATGACTGCAGACGTGATTCAGGCAACGCATGAGGAATGCCTGAAGTGTGGAATGGATGGATATGTTTCAAAGCCATTTGAAGCTGAGCAGCTTTATCGGGAAGTTTCACGGTTTTTCATATCAACTTCATGA 3090 0.4304 MSLLYVVGFGLKLGHLLLALCCWILSVVYIYWFNNGGIMETKVGFLGGVGKMGLRWWEKISGNSCKIHQHYYQCIGSKKVRRTLWRKLLQAWVLGWTLVSLWIFCFVTFQATEKRKETLASMCDERSRMLQDQFNVSMNHIQAMSILISTFHHAKSPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKRQGWTIKRMDTLEQNPIHEDDYAPEALEPSPVREEYAPVIFAQETISHVISVDVLSGKEDRENVLRARELGKGVLTAPFRLLKTNHLGVILTFAVYNTDLPSNATPNERIQATNGYLGGVFDIESLVEKLLQQLASKQTVIVNVYDTTNHTHPIPMYGSNVSDDGFYHVSSLNFGDPFRKHEMHCRFKQKPPWPWLAIATSIGILVIALLVGQIFHATVNRIAKVEDDYRKMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQKEYVRTAQGSGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAVLDDVLSLFSEKSQEKGVELAVYISDKVPEQLVGDPGRFRQIITNLMGNSIKFTDKGHIFVTVHLIEEVVNSIEVATSKNTLSGFPVADRCQSWKGFSSVNQEGPLGSFSSSSASDRITLIVSVEDTGEGIPIEAQSRIFTPFMQVGPSVSRKHGGTGIGLSISKCLVGLMHGEIGFVSIPKVGSTFTFTAVFTNESPSSTAGKTQQINNQPNLASSEFQGMNALVIDPRPVRAKVLKYHIKRLGIHVEIASDLNQGLSVISNGDVVINMILVEHEVWDSDSGVSSQFTNNMRKIDLGIPPKLFILVNSSSSSRTSSVTLGVHSPTFIVKPLRASMLAATLQRAMGLGNKGNPRNGELPSLSLRHLLRGRKILIVDDNSVNRTVAAGALKKYGADVVCVNSGIDAISMLKPPHQFDACFMDIQMPEMDGFEATRRIREMEHHVNIGEVPVETLENTSNWHLPILAMTADVIQATHEECLKCGMDGYVSKPFEAEQLYREVSRFFISTS 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1259 1029 CDD HATPase_EvgS-ArcB-TorS-like 560 714 - -
Lele24g1259 1029 FunFam Histidine kinase 4 160 389 - -
Lele24g1259 1029 Pfam CHASE domain 159 355 IPR006189 -
Lele24g1259 1029 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 711 IPR036890 -
Lele24g1259 1029 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 430 509 IPR036097 GO:0000155|GO:0007165
Lele24g1259 1029 Coils Coil 420 440 - -
Lele24g1259 1029 Gene3D CHASE domain 160 389 IPR042240 -
Lele24g1259 1029 Gene3D - 108 159 - -
Lele24g1259 1029 ProSiteProfiles Response regulatory domain profile. 892 1025 IPR001789 GO:0000160
Lele24g1259 1029 Gene3D - 733 867 - -
Lele24g1259 1029 PANTHER TWO-COMPONENT HISTIDINE KINASE 121 1018 - -
Lele24g1259 1029 SUPERFAMILY CheY-like 888 1023 IPR011006 -
Lele24g1259 1029 ProSiteProfiles Histidine kinase domain profile. 450 716 IPR005467 -
Lele24g1259 1029 CDD REC_hyHK_CKI1_RcsC-like 893 1021 - -
Lele24g1259 1029 SMART CHASE_2 156 357 IPR006189 -
Lele24g1259 1029 Pfam Response regulator receiver domain 893 1020 IPR001789 GO:0000160
Lele24g1259 1029 ProSiteProfiles Response regulatory domain profile. 744 866 IPR001789 GO:0000160
Lele24g1259 1029 SMART HKATPase_4 555 716 IPR003594 -
Lele24g1259 1029 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Lele24g1259 1029 CDD PRTases_typeI 854 920 IPR000836 -
Lele24g1259 1029 Pfam His Kinase A (phospho-acceptor) domain 443 506 IPR003661 GO:0000155|GO:0007165
Lele24g1259 1029 Gene3D - 507 718 IPR036890 -
Lele24g1259 1029 SMART REC_2 891 1021 IPR001789 GO:0000160
Lele24g1259 1029 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 714 IPR003594 -
Lele24g1259 1029 FunFam Histidine kinase 4 415 506 - -
Lele24g1259 1029 SUPERFAMILY CheY-like 739 867 IPR011006 -
Lele24g1259 1029 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Lele24g1259 1029 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Lele24g1259 1029 Gene3D - 886 1027 - -
Lele24g1259 1029 Gene3D - 410 506 - -
Lele24g1259 1029 PRINTS Bacterial sensor protein C-terminal signature 659 669 IPR004358 GO:0016310|GO:0016772
Lele24g1259 1029 PRINTS Bacterial sensor protein C-terminal signature 641 655 IPR004358 GO:0016310|GO:0016772
Lele24g1259 1029 PRINTS Bacterial sensor protein C-terminal signature 676 694 IPR004358 GO:0016310|GO:0016772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1259 Lele-ChrLele24 16863394 16868202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1259 1 1029 Miscellaneous Gene Families AT1G27320 68.541 0.0 1417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele24g1259 CHASE 2.4e-37 CL0165