Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1255 ATGGACTGGAACGCAAAGTCTTTCTCGCATTGGGACTGGGAACACCTACTTTTCAACACAAAAGCAACTGAGAATCCTAGGATAAAGCCAGTAGATTGGAGTGGCAAAGCAGATCAAGAAGTCAATGTTGGGCTGTTCAATCCATCATGTGGTATTGATAGTTCTGGGTCTGAGCTACAACATTTTTCTTCATCAAGGGGCTCAAAATCAGCTTCTATGAATTCTTCATCAAATGGGTATAGCAGAACATCGATACTCACTTTTGAAGGCTCCCAAGAAGATTCTAATGGTAAGAAAGAGAGGTCAAAAGAAGAGCCTCTTGGAAATCCTCCCACACTTGAACATTATTCTGTCTCTGGTGAACCATTGCACAGTCTAAAGCTTGGCAAACGGCTGTACTTTGAAGATGTCTGTGTTGGAAGTGATACAAAGAACACATCTCATTCTTCCGTGCCATCTTTGAGTACTGGGAAAAAATGCAAGGCAAATAGTCAGAGCTCACAACCTCCACACTGCCAGGTTGAAGGCTGTAACCTTGACCTATCATCAGCTAAAGATTACCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCAAATGTGGTTGTAGATGGTAAAGAGCTTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGTCTCTCAGAGTTTGATGGAAAAAAAAGAAGTTGCCGGCGTCGTCTATCTGATCATAATGCTAGGCGTCGGAAGCCTCATTCTGAAGCTGTCCAGTTGAATGCGTCATTTTTGTCCTCATCCCCATACGATGGGAGGCAACAGCTGAGCCCATTTCCTAATTCTAGGGCTGCTATCAACTTCGCTTGGCCTGATACATACAGCAGCAGGATCTCCCAAACGAAAGAATTCCTCATGAAACCTGCAAAAATAGGAGGTACCATTGGGCAGGTGCATCAGCCCTTCAATGAGATCCCAATTTCTAAGCTTTCTGAAGGTTCTGGTGGCCTTTGCACATCCAAAGCCATAGCAACAAAGACAAACGATCCAGGGATGGAAGATTTCATTACCTCGTCAGATCCGAATGCTCCACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAACCACCACCTCTTGGGGTCAATACGAGACTAAGTTTGCTTCTCAAGAGCACTCCAATTGCACGACTCAGGCGGTAACACACTCAATGATTCAGTGCTTGCCTTATGCTTCATCAGACTACTGGCAGACTTGTCAACAACCAGTCTCATACTCAGAGTGTAAAGATGACAGTCACTTTGAAGATTTCCAGCTGCTCAGAGCACCCTATGAGTCTGGCTTTTGCAACCAGTTGGATTAA 1341 0.4452 MDWNAKSFSHWDWEHLLFNTKATENPRIKPVDWSGKADQEVNVGLFNPSCGIDSSGSELQHFSSSRGSKSASMNSSSNGYSRTSILTFEGSQEDSNGKKERSKEEPLGNPPTLEHYSVSGEPLHSLKLGKRLYFEDVCVGSDTKNTSHSSVPSLSTGKKCKANSQSSQPPHCQVEGCNLDLSSAKDYHRKHRVCESHSKSPNVVVDGKELRFCQQCSRFHGLSEFDGKKRSCRRRLSDHNARRRKPHSEAVQLNASFLSSSPYDGRQQLSPFPNSRAAINFAWPDTYSSRISQTKEFLMKPAKIGGTIGQVHQPFNEIPISKLSEGSGGLCTSKAIATKTNDPGMEDFITSSDPNAPQDFHRALSLLSTTTSWGQYETKFASQEHSNCTTQAVTHSMIQCLPYASSDYWQTCQQPVSYSECKDDSHFEDFQLLRAPYESGFCNQLD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1255 446 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Lele24g1255 446 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Lele24g1255 446 MobiDBLite consensus disorder prediction 93 108 - -
Lele24g1255 446 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 59 317 IPR044817 GO:0003677
Lele24g1255 446 Pfam SBP domain 172 245 IPR004333 GO:0003677
Lele24g1255 446 SUPERFAMILY SBT domain 170 250 IPR036893 GO:0003677|GO:0005634
Lele24g1255 446 MobiDBLite consensus disorder prediction 57 119 - -
Lele24g1255 446 MobiDBLite consensus disorder prediction 143 172 - -
Lele24g1255 446 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Lele24g1255 446 MobiDBLite consensus disorder prediction 57 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1255 Lele-ChrLele24 16786575 16789230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1255 1 410 SBP-box Gene Family AT5G43270 38.551 2.20e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele24g1255 SBP 1.4e-32 No_clan