Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1243 ATGGCGGAAGAACAGAAAGTTGGCTCGATGCTACCCGAATTTCCAACTGGTAGAGTGAAGAAAATCATGAAGCTTGATCCCGAAGTTCAGAGGATAAGTTCAGAAGCCTTGTTCCTGGTATCATGCTCGACCGAGCTCTTCCTCCGATTCCTGGCTGAAAAATCTGCCCAAGTTGTCATCGAGAAGAAGCGCAAGACTGTGAAGCTTGAACACTTAAGAATCGGGGTCAAGAGGCATCAACCAACCAGCGATTTTCTGCTTGATTCGCTTCCTCTGCCCTCTCGGCGGCCCGTTGATTGCCCGACCAAAGATCGGAGCCAATCTGGCCTTGATGCTGATAAACTTCCTCCGCCAGGTACTCGCCGTATCGATCATTTCTTCCGAAAGCCAGATGAAGAAGCGCCAGAACCGAGAGATGAGTCTTAG 426 0.5 MAEEQKVGSMLPEFPTGRVKKIMKLDPEVQRISSEALFLVSCSTELFLRFLAEKSAQVVIEKKRKTVKLEHLRIGVKRHQPTSDFLLDSLPLPSRRPVDCPTKDRSQSGLDADKLPPPGTRRIDHFFRKPDEEAPEPRDES 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1243 141 MobiDBLite consensus disorder prediction 117 141 - -
Lele24g1243 141 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Lele24g1243 141 MobiDBLite consensus disorder prediction 84 141 - -
Lele24g1243 141 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 74 IPR003958 -
Lele24g1243 141 SUPERFAMILY Histone-fold 14 92 IPR009072 GO:0046982
Lele24g1243 141 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1243 Lele-ChrLele24 16478542 16478967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1243 4 129 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.873 1.33e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lele24g1243 CBFD_NFYB_HMF 5.8e-19 CL0012