Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1236 ATGGATGCTGCTGAAGTTGAAGAAAATCTGTTTGCAGCGAGTGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCTATTATATATTGCAAAGTATCGTCAATATTTCCATCTTTAGAAGCAGCTAGGCCTAGGAGCAAAGCTGGTATTGAGGCTTTATGTTCATTGCATGTAGCCCTAGAGAAGGCCAAGAATGTTCTTCAGCACTGCTCACAGTGTAGTAAACTTTACTTGGCTATAACTGCGGAAGCTGTTCTTCTAAAATTTGAGAAGGCTAAATCTGCTATCAAATATGGCCTTATAAAGGTGGAAGATATTGTTCCGCGGTCTATTGCATGTCGGTGTCAGGAGATTGTGAATGAACTCGATGGTGTAAAATTTGCACTTGACCCATTGGAGAAGCAAGTTGGTGCTGATTTAATTGCATTGCTTCAGCAAGGGAGACAATGTAGCGACTCTAGTGACACCAGCGAGCTTGAATGTTTTCACCAGTGTGCTATTATACTTGGAATCACTTCTTCGAGAGAAGCTCTTACAGAAAGAAGAGCTCTCAAAAAGCTCATTGAAAGAGCTAGGGCTGAGGAAGACAATCAGAAGGAATCAAAAGTTGCATATCTTCTACACCTCTTAAGGAAGTATTCCAAGTTATTTAAGTGTGAAATTTCAGATGATAATGATTCACAGGGTTCTGCTCCTTGTTCTCCCTCTACTCATGGATCTGTTGAGTGCACTGTTCCTAATAGTCAATACCATGCCCTAGAAAGAGAGATTTCAAAACGCTGTTCCATTAAGTTAAATCCAATCAATAGGAAATCAGGGCGGATGCATCTTCCGCCTGAAGAGTTGAAGTGTCCAATATCTTTGCAGATTATGTATGATCCTGTCATCATTGTTTCCGGACAAACATATGAAAGGGTTTGCATTGAGAAATGGTTCAGAGATGGACACAGCACTTGCCCCAGGACTCAACAGAAACTCGATCATCTTTTATTGATTCCGAATTACTGTGTTAAGGGTCTTCTCACTAGCTGGTGTGAACAGAATGGAGTTCCTGTTCCTTATGGCCCTCCTGAATCGTTTGATCTTAACTACTCGAGATTGGCTTTATCAGAGCCTGAATCAGCAAATTCAAAATCTGTAAACAGTTTGAGCTCATGCAAGTTGAAGGGTGAGAAAGTGGTTCCTTTAGAAGAGAGCAGTATCTCAGAGGAAGCCGGAGATAAAAACGAAGGTTTATCCGCACAAGAGGAAGATACTGAGCAGTATCTCAGGTTTCAGAAAGCTTTGGTTGAAGAGACCAATTACAAGATGAAGTGCAATGTGGTCGAACAGTTAAGGATATTACTAAGGGATAACGAGGAAGCCAGGAATTTTATGGGATCTCATGGATTTGTTGAGGCACTTTTGCAGTTTCTAAAGTCAGCTGTGTCTGAAGGGAATCTGAAGCTTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACAGAAATAAGGCAATTATGTTATCAGCAGGAGTATTACCATTGCTGGAGGAAATTTCTAACTCAAGTTCATATGGTTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGGCAAAACAAAGATTGGGAAGACTCAGGCTGTCCAGTTCCTAATCCGTCTCCTTCAAGCTGACACCGAAGTTCAATGCAAACAAGATTCCCTCCACGCACTCTATAATCTCTCCACTGTCCCTTCAAATATTCCAAACCTCCTTTCGTCTGGGATCATCAATGGCCTTCTATCCCTTCTTTCAGAACAGGGTGATAATGATAATAGCATGTGGACAGAGAAATGCATTCCTGTTCTGATAAATTTGGCTACTTCTAATTTGGGAAGAGAGGAAATAATCTCAACCCCAGGACTCATTAATGCACTGGCTAAGAAACTAGAATCTAGTCAGCTCTTGGAGCAAGAACAAGCTGTGTCTTGTCTTTTAGTCTTGTGTAATGGGAATGAGAAATGTAGCCACAAGGTCCTACGAGAAGGTATAATACCTTCATTGGTTTTGATATCAGTAAATGGGACCCCAAGAGCTAAAGAAAAAGCTCAGAAACTTTTGATGCTCTTTAAAGAGCAGCGACAACGAGATCCTTCACCTGTTAAGACGCATTTGTGTCCCCCCGTTGCTCCTGAATCTAAAAAGAATGTGCCTGTCGTTCCTCAGCCAGAAACAAAACCTGTGATTATAAAGTCAATGTCTAGAAGAATAATTGAGAAGCCTTTCAGATTTTTCAACAAAAGCAAAAGTTATTCTATTTACCATATTTAG 2316 0.4102 MDAAEVEENLFAASDAKLHGEMCKALSIIYCKVSSIFPSLEAARPRSKAGIEALCSLHVALEKAKNVLQHCSQCSKLYLAITAEAVLLKFEKAKSAIKYGLIKVEDIVPRSIACRCQEIVNELDGVKFALDPLEKQVGADLIALLQQGRQCSDSSDTSELECFHQCAIILGITSSREALTERRALKKLIERARAEEDNQKESKVAYLLHLLRKYSKLFKCEISDDNDSQGSAPCSPSTHGSVECTVPNSQYHALEREISKRCSIKLNPINRKSGRMHLPPEELKCPISLQIMYDPVIIVSGQTYERVCIEKWFRDGHSTCPRTQQKLDHLLLIPNYCVKGLLTSWCEQNGVPVPYGPPESFDLNYSRLALSEPESANSKSVNSLSSCKLKGEKVVPLEESSISEEAGDKNEGLSAQEEDTEQYLRFQKALVEETNYKMKCNVVEQLRILLRDNEEARNFMGSHGFVEALLQFLKSAVSEGNLKLQESGAMALFNLAVNNNRNKAIMLSAGVLPLLEEISNSSSYGCATALYLNLSCLEEGKTKIGKTQAVQFLIRLLQADTEVQCKQDSLHALYNLSTVPSNIPNLLSSGIINGLLSLLSEQGDNDNSMWTEKCIPVLINLATSNLGREEIISTPGLINALAKKLESSQLLEQEQAVSCLLVLCNGNEKCSHKVLREGIIPSLVLISVNGTPRAKEKAQKLLMLFKEQRQRDPSPVKTHLCPPVAPESKKNVPVVPQPETKPVIIKSMSRRIIEKPFRFFNKSKSYSIYHI 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1236 771 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 352 IPR013083 -
Lele24g1236 771 MobiDBLite consensus disorder prediction 713 735 - -
Lele24g1236 771 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 510 IPR000225 GO:0005515
Lele24g1236 771 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele24g1236 771 Gene3D - 428 607 IPR011989 -
Lele24g1236 771 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele24g1236 771 CDD RING-Ubox_PUB 285 325 IPR045210 -
Lele24g1236 771 MobiDBLite consensus disorder prediction 398 418 - -
Lele24g1236 771 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lele24g1236 771 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele24g1236 771 Gene3D - 608 711 IPR011989 -
Lele24g1236 771 SUPERFAMILY ARM repeat 425 707 IPR016024 -
Lele24g1236 771 PANTHER U BOX DOMAIN-CONTAINING 21 710 - -
Lele24g1236 771 Coils Coil 175 202 - -
Lele24g1236 771 SUPERFAMILY RING/U-box 275 353 - -
Lele24g1236 771 SMART arm_5 453 497 IPR000225 GO:0005515
Lele24g1236 771 SMART arm_5 537 578 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1236 Lele-ChrLele24 16409480 16413145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1236 1 770 U-box Gene Family AT1G24330 60.787 0.0 910
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1236 24 16409480 16413145 Lele24g1236 24 16409480 16413145 ECH
Lele21g1293 21 21041071 21044682 Lele24g1236 24 16409480 16413145 hybridization
Lele22g1293 22 18450584 18454265 Lele24g1236 24 16409480 16413145 hybridization