Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1228 ATGTTAACCAATCACTATGGAGACACATTTCTTCACATGGCAGTGGCTGGTTTTAGAAGCCCAGGTTTCCAAATACTGGACAAGCACACTGAGCTAATGAAGCAAGTTGTTAGTGGGAAGATTGTGAACATAAAGGACATTGAAATGTTAATGTCTGTCCTATCCATCGATTTGAACATTCGTGACGGCGATGGCATGACTCCCCTTGATCTTCTGAAGCGAAAACCTCGATCTGCATCCTCTGAGATTTTGATCAAGCAGTTGATTTCAGCTGGAGGAATATCTAATTATCCTGATTATCTGGCTAGAAATGTCCTTCGTTCCCAGCTGAAATCCCATGGCATTGGAAGGAGTCCTGGAACTTCTTTTAGAATCCCAGATGCAGAGATATTTCTGTACACTGGTGTCGATAAGGAATCATTGTCAGAAACCAACTATGATCAGGCAAGTGTAAAATCTAATTCTTACTCAGGTGAACTCAGCAGCACTTGTGAGTCAGCCAGCTTCCCATATGACAAGTCTGGTTCTGCTAAGTTCGCTACAAGGCGCTTAAATTTTTTTCTGCGGTGGCCTAAAAAGAAAGATAGAGAAGCCGCCGGTGCCTTAAAGCTGGACGACGAAGAGGATAATTTTTCATTATATTCTTTTGGTTCAAGGAAAAACGTGGAAAACATCCCAATCCCATTAAGGCAAAGATACTCAAACTTCTGTTCTCTTCCAAACAACAAAAGAACACTATCTATTAGGACTTATCTCCCAAGTCCATCCACCAGAGAGAAATTTACAGCGGGCCTAACACAAGGCGTGATTCAGGTAAACCCCCTTCTGGCACTTACTGGTCCTTTTATCAAACCAAAATCATCTATGGCTTCTTCACTTACTTCCATTGATAAGCAAAGAGATGTTAATAATAATATCATGGGACCCTCTTGCTCCAATCCATCAATAGATAAAGTTCATTTAAAATGTAAAGAGATGGCAATTGAAGAGGAAATTAAGGCAGAGTTCGGACGAAGCGGGTTTGACCTTGAAGATGAAGAAGTACTAAACAAATGTCTACCATTTTGCATAAACTACAGTCTCAAACCTTCCGATCTCGTTTCAAGTTGGGAGGTTTATTATCTAAACAGACAGCTGAATGGATCAACAGTTCAAAGTGCTGAAATCGATGGCTTTTTGGCTCACCTGCAAAATGAGCAGAAAGAAGCTATTATCAAGGAGGAAACTGATATTCATATTTACTCAAGTAGAGATGTAGAAATGCTCTTAAATGATGATGAAATTTCAAAAGATAATGCTCCTGGAACTCCAACAGATCACCAACAAGTTCTTCTATCACCTGCATATGATTCAACCTCTTTAACTAATGGGAGTGTCTTGTCATCTGGAAAATCATCAAAGCCTGCAACAGCATTTTCTAAGCGAACAAATAGGCTTGAGGTGAAGTTCAGCATCAACAACACGCCTAATCTAGAGAATGGAAAACAAGAACCTGGTCACGAGAATGATGAGGATGACATACTCAGGAAGGTTCATCCACGGCAAAGGTGTTCATTGGTGGTTCATGGATCAGGGCCCGAACCAGGTTGTAGATTCATGTATGATAGGACTGAAGATAGGTTTAATGCATTAGAAAACCGAATTAAGAAACATACAAGGGTACATGTGGCTTCTGGGCTCTATGAAGAACCAATGGACCCAACAATTGCTTCACAGAGAAGCATTTTCACTGTTGGCATGATTTGTTGTGAGGGAGAAGGGCGTCTAAATGAGAAGTCTGTCATGCTGCAGAGCAGTGCTGAGAGCTCTGGAGGGCAACGGGTTCGCCTAGAGTTACAACAACTAAGCCGCTTTTCAGTTTTCCCAGGCCAGGTAGTTGGTATTGAAGGGCATAATCCCAGTGGACATTGTTTAGTGGCATCCAAAATGGTAGATTCTATAGTTTCCTTTGTTGGTGATAGCGAGAATTTGAATCCAGCAAAGAAGCAAGCCTTTGCTAAGGAAAGTCATCCGACTGATCTGCCTTGCAAGCAGAGGGAGTTATCAATGGTTATTGCAGCTGGCCCTTTTACCACCACAGACAATTTATTGTTTGAACCTCTTGCAGAACTACTGGCATATGCAAAGAAAAGACCACCACAATTGATTATATTGATGGGACCATTTATCGATGCTGAACACCCAGACATTAAAAGGGGAACCACAGAAAGGAGCTATGATGAAATATTTCGTATTGAAATCCTCAGAAGGTTGGAAGATTATGTAGAGTGTATGGGTTCTGCAGTACGTATTCTTCTTGTACCATCTATACGGGATGCTAACCATGATTTTGTTTTCCCTCAGCCCGCATTTGATATCAATCTTGCTGATCTCAAGCCTCAGATAGCCAGTCTCACAAATCCTGGAATTTTTGAGGCAAATGAGGTAAAGGTTGGTTGCTGCACTGTGGATATCCTCAAGCAGCTCAGTGGGGAGGAAATATCACGATTTTCAGCAGATGCGAAACCTATTGATCGCATGAGTAGACTTGCAAACCATATTCTTAAGCAACAAAGCTTTTATCCTCTTTATCCACCGGCAGAAAGTGTTCCTTTGGACTATTCTCTTTCTCCAGAAGCTCTTCAAGTCCCGTGGGTACCAGATGTTCTCATTTTACCTTCAGACATCAAAGCATTGAGATATGGTGATCTTGCACAGGTGCTTAATGAAGAAAGTGAAGTGAACCACATGAAGTGCATTTCTGTCAATCCAGGAAGACTAGCCAAGGGAGAAGGAGGGGGTACTTTCGCCGAGCTCGACTTCTATGCGAGTGCTGACTCAAGCACTGCTTCAATTGTTGGCATATAA 2847 0.418 MLTNHYGDTFLHMAVAGFRSPGFQILDKHTELMKQVVSGKIVNIKDIEMLMSVLSIDLNIRDGDGMTPLDLLKRKPRSASSEILIKQLISAGGISNYPDYLARNVLRSQLKSHGIGRSPGTSFRIPDAEIFLYTGVDKESLSETNYDQASVKSNSYSGELSSTCESASFPYDKSGSAKFATRRLNFFLRWPKKKDREAAGALKLDDEEDNFSLYSFGSRKNVENIPIPLRQRYSNFCSLPNNKRTLSIRTYLPSPSTREKFTAGLTQGVIQVNPLLALTGPFIKPKSSMASSLTSIDKQRDVNNNIMGPSCSNPSIDKVHLKCKEMAIEEEIKAEFGRSGFDLEDEEVLNKCLPFCINYSLKPSDLVSSWEVYYLNRQLNGSTVQSAEIDGFLAHLQNEQKEAIIKEETDIHIYSSRDVEMLLNDDEISKDNAPGTPTDHQQVLLSPAYDSTSLTNGSVLSSGKSSKPATAFSKRTNRLEVKFSINNTPNLENGKQEPGHENDEDDILRKVHPRQRCSLVVHGSGPEPGCRFMYDRTEDRFNALENRIKKHTRVHVASGLYEEPMDPTIASQRSIFTVGMICCEGEGRLNEKSVMLQSSAESSGGQRVRLELQQLSRFSVFPGQVVGIEGHNPSGHCLVASKMVDSIVSFVGDSENLNPAKKQAFAKESHPTDLPCKQRELSMVIAAGPFTTTDNLLFEPLAELLAYAKKRPPQLIILMGPFIDAEHPDIKRGTTERSYDEIFRIEILRRLEDYVECMGSAVRILLVPSIRDANHDFVFPQPAFDINLADLKPQIASLTNPGIFEANEVKVGCCTVDILKQLSGEEISRFSADAKPIDRMSRLANHILKQQSFYPLYPPAESVPLDYSLSPEALQVPWVPDVLILPSDIKALRYGDLAQVLNEESEVNHMKCISVNPGRLAKGEGGGTFAELDFYASADSSTASIVGI 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1228 948 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 329 937 IPR016722 -
Lele24g1228 948 Pfam DNA polymerase alpha/epsilon subunit B 684 888 IPR007185 GO:0003677|GO:0006260
Lele24g1228 948 Gene3D - 326 402 IPR043034 -
Lele24g1228 948 MobiDBLite consensus disorder prediction 483 503 - -
Lele24g1228 948 FunFam DNA polymerase alpha subunit B 327 400 - -
Lele24g1228 948 Gene3D - 664 834 - -
Lele24g1228 948 Gene3D - 835 945 - -
Lele24g1228 948 FunFam DNA polymerase alpha subunit B 664 829 - -
Lele24g1228 948 Coils Coil 534 554 - -
Lele24g1228 948 SUPERFAMILY Ankyrin repeat 4 102 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1228 Lele-ChrLele24 16244374 16270756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1228 326 948 Core DNA Replication Machinery Family AT1G67630 57.735 0.0 739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1307 21 21229462 21235126 Lele24g1228 24 16244374 16270756 hybridization
Lele22g1306 22 18542233 18548137 Lele24g1228 24 16244374 16270756 hybridization