Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1185 ATGCAATTCGCAAAGCTCGACGACTCTCCTATGTTTCGCAAGCAGATACAATGCTTGGAGGAGAGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAAGGGTGCAGAAAATACACTGAAGGACTTGGGGAGGCATACGATGGTGACATTGCATTTGCAAGTGCTTTGGAAACTTTTGGTGGAGGCCATAATGATCCTATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAAGAAGTCCTTCGCTCACAGGTTGAACATATGCTAAATGACAGATTACTTCAATTTGTTAATATTGATTTGCATGAAGTCAAGGAAGCACGCAAGCGTTTTGACAAAGCCAGTCTTATTTATGATCAGGCTCGTGAAAAGTTCCTGTCTTTAAGAAAAGGCACAAAAACAGATTTAGCTACTGCTCTTGAAGAGGAGCTTCATAATGCAAGATCCACTTTTGAGCAAGCTCGATTTAATCTGGTTACTGCCTTGTCAATTGTTGAAGCCAAGAAGAGATTTGAATTTTTGGAGGCAATCAGTGGGACCATGGATGCGCATCTTCGCTACTTCAAACAGGGGTATGAGTTATTGCACCAAATGGAGCCATATATTAACCAGGTTCTGACATATGCTCAGCAGTCAAGAGAAAGATCCAACTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAGTACAAAAGGCTGGTTGATCGAGAGAGTAGGTGGTCTTCAAATGGTTCTGATGGGTCTCCTAATGGAGATGGTATACAAGCCATCGGTAGAAGTTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTTTCAAAGCGGTCTTCAAACTTAAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTGGACAGTCGAGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGATCTAGCAGTCAACATTCTGGTCAGAGGAATAGTGCTGAGCTTGGTTCTGGGCTCTTGAGCCGATGGCTGTCTTCTCATCATCATCTTGGTGGGGTACATGATGAAAAATCTGTTGCTCATCACACAGTGAACCTGCTTACATCAACAATCAAAGTTGATGCTGACCAATCAGACTTGAGGTTTTGCTTCAGAATCATTTCACCAACAAAGAACTACACTTTACAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCTTCATTGCTGACTTCTCAGATTCCTGAAAGGTGCCTTCCTGCTAGTCCCAAGGGAAGTGGTCATAATAGGTCTGCCAGTGAGAGTAGTTCTTTCGAAAGTTCAGATTGTGATCACGCTGCTGTAGAAGAATATAAATCAGACAGAGGTCTTGCTTCTGCACATATGGAACGCCCCTCAAGAAGCTTGCAGCAGCAGCAACGAGCATGTATCAAAAGTGAGAAGCCAATTGATGTTCTACAAAGAGTTAGTGGAAATGATATATGTGCTGATTGTGGGGCGCCAGAACCTGATTGGGCATCATTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAATCTTGGTGTACACATATCAAAGGTAAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAATCACTTGGGAATGCCTTTGCCAACTCAGTCTGGGAGGAATTGTTGCAATCAAGAAGTGCCTTTCAGATTGAACTTGCCCCCACAGGCTTAAGTAAGTCCGACAAACCACAGGTTCTCTTCAGCAAACCTTGTCAATCTGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTACGCAGAGAAGCTTTTTGTTGACAAACCAAAGGATAATCAATATCGTCTCTTGGTGGCACAACAGATCTGGGAGGCTGTTCATTCTAATGACAGAAAAGCTGTTTACCACTACATTGTTACTTATGAAGTTGATGTTAATGCTGTATATGAGCAGACATGTAGCTCTTCTTTAACCCTTGCCAAAGTGATGCTATTACAAGAGCACCCAGGCCATGATCACAACTCTACTTTAGCAGGGAACTCATTCGACTGGTCCTCTACTTGCCCTCTGATTATGGTGGGAGCAAAAGATCAGGCCATGAATGATCTTGATGGGTGCACCCTACTTCATCTTTCTTGTGAAACTGCAGACATTGGCATGCTGGAGCTCCTTCTTCAGTATGGTGCAAGTATTAATGCCACTGACATGAGAGGCCAAACACCTCTGCATCGCTGCATTCTCAAAGGAAGATCTACATTGGCAAGATTACTTCTCTCAAGGGGAGCTGATCCTCAAGCTGTCGATGAAGAGGGAAGAACCCCCCTTGACCTTGCCATTCAGTCAAACTTTGACGACAGTGAAGTGCTTGCTTTATTATCTGATTCAAACGGATGGCAAGTAAAGAAGCACTGA 2508 0.427 MQFAKLDDSPMFRKQIQCLEESSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEARKRFDKASLIYDQAREKFLSLRKGTKTDLATALEEELHNARSTFEQARFNLVTALSIVEAKKRFEFLEAISGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRLVDRESRWSSNGSDGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSGQRNSAELGSGLLSRWLSSHHHLGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLTSQIPERCLPASPKGSGHNRSASESSSFESSDCDHAAVEEYKSDRGLASAHMERPSRSLQQQQRACIKSEKPIDVLQRVSGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFANSVWEELLQSRSAFQIELAPTGLSKSDKPQVLFSKPCQSDSLSVKEKFIHAKYAEKLFVDKPKDNQYRLLVAQQIWEAVHSNDRKAVYHYIVTYEVDVNAVYEQTCSSSLTLAKVMLLQEHPGHDHNSTLAGNSFDWSSTCPLIMVGAKDQAMNDLDGCTLLHLSCETADIGMLELLLQYGASINATDMRGQTPLHRCILKGRSTLARLLLSRGADPQAVDEEGRTPLDLAIQSNFDDSEVLALLSDSNGWQVKKH 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1185 835 Coils Coil 151 171 - -
Lele24g1185 835 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 646 - -
Lele24g1185 835 SUPERFAMILY ArfGap/RecO-like zinc finger 501 640 IPR037278 -
Lele24g1185 835 Gene3D Arfaptin homology (AH) domain/BAR domain 4 249 IPR027267 -
Lele24g1185 835 SMART ANK_2a 736 765 IPR002110 GO:0005515
Lele24g1185 835 SMART ANK_2a 802 833 IPR002110 GO:0005515
Lele24g1185 835 SMART ANK_2a 769 798 IPR002110 GO:0005515
Lele24g1185 835 Pfam Putative GTPase activating protein for Arf 504 640 IPR001164 GO:0005096
Lele24g1185 835 ProSiteProfiles Ankyrin repeat region circular profile. 769 801 - -
Lele24g1185 835 SUPERFAMILY PH domain-like 235 427 - -
Lele24g1185 835 CDD PH_ACAP 295 432 - -
Lele24g1185 835 PRINTS HIV Rev interacting protein signature 555 576 IPR001164 GO:0005096
Lele24g1185 835 PRINTS HIV Rev interacting protein signature 532 549 IPR001164 GO:0005096
Lele24g1185 835 PRINTS HIV Rev interacting protein signature 513 532 IPR001164 GO:0005096
Lele24g1185 835 SUPERFAMILY Ankyrin repeat 661 817 IPR036770 -
Lele24g1185 835 ProSiteProfiles Ankyrin repeat profile. 736 768 IPR002110 GO:0005515
Lele24g1185 835 Pfam PH domain 294 427 IPR001849 -
Lele24g1185 835 CDD ArfGap 504 632 - -
Lele24g1185 835 Gene3D - 714 833 IPR036770 -
Lele24g1185 835 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Lele24g1185 835 PANTHER CENTAURIN/ARF 3 828 IPR045258 GO:0005096
Lele24g1185 835 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Lele24g1185 835 Pfam BAR domain of APPL family 6 232 - -
Lele24g1185 835 Coils Coil 118 138 - -
Lele24g1185 835 Gene3D Arf GTPase activating protein 481 647 IPR038508 -
Lele24g1185 835 ProSiteProfiles ARF GTPase-activating proteins domain profile. 501 645 IPR001164 GO:0005096
Lele24g1185 835 ProSiteProfiles Ankyrin repeat region circular profile. 736 767 - -
Lele24g1185 835 ProSiteProfiles Ankyrin repeat profile. 769 801 IPR002110 GO:0005515
Lele24g1185 835 SMART PH_update 293 430 IPR001849 -
Lele24g1185 835 MobiDBLite consensus disorder prediction 447 463 - -
Lele24g1185 835 CDD BAR_SFC_plant 14 215 IPR035670 -
Lele24g1185 835 Pfam Ankyrin repeats (3 copies) 730 799 IPR002110 GO:0005515
Lele24g1185 835 SMART arf_gap_3 501 645 IPR001164 GO:0005096
Lele24g1185 835 MobiDBLite consensus disorder prediction 439 464 - -
Lele24g1185 835 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Lele24g1185 835 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Lele24g1185 835 Gene3D - 285 438 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1185 Lele-ChrLele24 11888210 11897924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1185 511 641 C2H2 Transcription Factor Family AT4G21160 41.667 1.48e-21 95.1