Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1171 ATGTCGAGCTGCAACATGGACGTTGGTTCGGAGCAACTATGCTATATACCCTGCAAATTTTGCAACATTGTTCTTGCGGTAAGTGTTCCATGCGGTAATATTTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTTTGGTCTGTGAACATGGCCGCCGCATTTCAGTCACTGTCAAGGCAACAAGTTCAGGCTTCTGGGTTATCCAATAATCCAGAGTTTAGAATCGAGACTGGTTCGTCTTCAAGATGCAGCAATGGGATTGCAAAACGAGCTCCCACCACACGTATTGCAACTGAGGAAAGGCCTGTGACTAGGCCTCCCGAGAAGAGACAGCGAGTACCTTCAGCCTACAATCAGTTCATAAAAGAAGAGATTCAGAGGATCAAAGTCAATAACCCAGATATCAGTCACAGGGAAGCATTCAGTACAGCTGCAAAGAATTGGGCACATTTCCCTCACATTCATTTCGGGTTGATGCTGGAGGCCAATAATCAAGCTAGGATTGGGAATTAA 522 0.4598 MSSCNMDVGSEQLCYIPCKFCNIVLAVSVPCGNIFDIVTVRCGHCSNLWSVNMAAAFQSLSRQQVQASGLSNNPEFRIETGSSSRCSNGIAKRAPTTRIATEERPVTRPPEKRQRVPSAYNQFIKEEIQRIKVNNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQARIGN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1171 173 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Lele24g1171 173 FunFam axial regulator YABBY 5-like 99 157 - -
Lele24g1171 173 Pfam YABBY protein 10 161 IPR006780 GO:0007275
Lele24g1171 173 Gene3D High mobility group box domain 99 156 IPR036910 -
Lele24g1171 173 SUPERFAMILY HMG-box 105 154 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1171 Lele-ChrLele24 10455694 10459893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1171 5 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.619 8.93e-86 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele24g1171 YABBY 8.5e-67 CL0114