Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1128 ATGGCGTGGTCTAATGGGGGTACTGGTAACTTCTCGGCCCAGAAGTCGGCTCGCCCGACACGGCCTAGCTACGTTCCTCCTCACTGCAGGAACAATGGCATGCCTGGTTTCAACAACAATGCGAACTCATTAATGTCGGCAAATAATGGGTCAGCTCAGTCTGGTTTCGCTTCCTTCAACTCTTACAATTACGGACAAGCAAGGGGTGGTGCGAGTAACGGCCGTTTTGGTGGTCGTGGTCGTGGTCGTGGTGGTAGAGGCTGGAGGTTTGATCGACCGGAAGAGACTGATGAGCCGAACCATTACTCAAATCGAAACGGTTTTGGGATTCCTGATACGATCGACACTACAGAGAGTTTCGGAGAAGATACCGATGTTGGTGGTGATATCAATTTTGACGCATACGAAGATATTCCGGTAGAAGTCAGTGGTTCCGACGTACCCCCACCGATCAATACCTTCGCAGAAATAGAGTTGAACGAGGTTTTGAGCAAGAATATCAAGCGATGCAAGTACGTCAAACCCACTCCAATTCAGCGTCGTGCGATTCCCATCGCTGTTGCCGGTCGCGACTTGATGGCTTGTGCTCAGACCGGGTCAGGGAAGACGGCGGCGTTTTGTTTCCCCATTATATCTGGGGTTTTGAAGGATCGTTCTAGGTTTTTGCCTACGGCTTGTGAAGGCTGGACTTCATATCCCACTGCGCTTATAATGTCACCAACTAGGGAGTTATCATGCCAGATTCATGATGAGGCCACGAAGTTCGCTTATCAGACTGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCACCGATTTATCAGCAGCTTCGTAATTTACAAAAAGGGGTGGACATCTTAGTTGCAACTCCAGGGCGCCTAGTTGATATGATTGAGAGAGGTAGGGTTTCACTCACTCGAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACAATGCTCTTCAGTGCTACGTTCCCAGATGATATACAGAAGCTTGGGGCGGACTTTCTTTCGAACTACATATTCTTAGCAATTGGAAGAGTTGGTTCCAGCACTGAATTGATTGTACAGAAAGTTGAACTTGTTCAGGATGTGGATAAAAGAAACCGTCTTGTAGATCTTCTCCTTTCTCAAAGGGTAAATGGGTTCAATGGAAAGCAAGCTTTGACTCTAGTATTTGTTGAAACAAAAAGAGGAGCAGATGCTTTGGAAAATTGGCTGTCGAGAAAAGGTTTTCAGGCTATTGCGATACATGGTGACAAAGTTCAAATGGAGAGGGAAAGAGCCTTGAGATCGTTCAAAAGTGGTGCTACTCCTATTCTGGTCGCCACCGATGTTGCTTCAAGAGGTTTAGACATACCACATGTGGCTCATGTTGTCAATTTCGACTTGCCAAAAGATATTGATGGCTATGTTCACAGAATTGGCCGAACTGGTCGTGCCGGCAAGTCTGGTTTTGCCACTGCTTTCTTCAGTGACCAAAACATCCCTCTTGCAAAGCCCCTTGTTGAACTCATGCAAGAAGCAAACCAAAAGGTTCCCCCATGGCTCACCCAATATGCAGAGAGTTCTTCATATGGCATCTGTAGAAGCAGCAAAAGGGGCCCGTGGTCCGGTAATGGCAATTATGGCGGCCATGACTTCAGAAATATGACTCAACCTGAAGAAGGGTATAACAACCACTATGAGGATCCAGGTTTTACAGAGAACTGTGGCACTATAACTACAGCTTATGACATACCTAATTCTGGCAATGATTCTTATGGTATAGCAAACGCGGATCCTCCTACTAGCTGCAAAGACCATTACAATGATGTTGCTGACACTTATTATGGAAGTGTCGGGCCAAATGGGTATGCATCTGTTGTTCCTACTGGATGGGACTAG 1965 0.4672 MAWSNGGTGNFSAQKSARPTRPSYVPPHCRNNGMPGFNNNANSLMSANNGSAQSGFASFNSYNYGQARGGASNGRFGGRGRGRGGRGWRFDRPEETDEPNHYSNRNGFGIPDTIDTTESFGEDTDVGGDINFDAYEDIPVEVSGSDVPPPINTFAEIELNEVLSKNIKRCKYVKPTPIQRRAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGVLKDRSRFLPTACEGWTSYPTALIMSPTRELSCQIHDEATKFAYQTGVKIVAAYGGAPIYQQLRNLQKGVDILVATPGRLVDMIERGRVSLTRIKFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPDDIQKLGADFLSNYIFLAIGRVGSSTELIVQKVELVQDVDKRNRLVDLLLSQRVNGFNGKQALTLVFVETKRGADALENWLSRKGFQAIAIHGDKVQMERERALRSFKSGATPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGFATAFFSDQNIPLAKPLVELMQEANQKVPPWLTQYAESSSYGICRSSKRGPWSGNGNYGGHDFRNMTQPEEGYNNHYEDPGFTENCGTITTAYDIPNSGNDSYGIANADPPTSCKDHYNDVADTYYGSVGPNGYASVVPTGWD 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1128 654 Pfam DEAD/DEAH box helicase 176 358 IPR011545 GO:0003676|GO:0005524
Lele24g1128 654 Gene3D - 113 371 IPR027417 -
Lele24g1128 654 Gene3D - 372 552 IPR027417 -
Lele24g1128 654 SMART helicmild6 427 508 IPR001650 -
Lele24g1128 654 SMART ultradead3 171 384 IPR014001 -
Lele24g1128 654 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 120 547 - -
Lele24g1128 654 FunFam ATP-dependent RNA helicase RhlB 372 551 - -
Lele24g1128 654 FunFam Probable ATP-dependent RNA helicase DDX4 115 371 - -
Lele24g1128 654 Pfam Helicase conserved C-terminal domain 395 508 IPR001650 -
Lele24g1128 654 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 547 IPR001650 -
Lele24g1128 654 MobiDBLite consensus disorder prediction 1 19 - -
Lele24g1128 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 234 524 IPR027417 -
Lele24g1128 654 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Lele24g1128 654 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 369 IPR014001 -
Lele24g1128 654 MobiDBLite consensus disorder prediction 1 34 - -
Lele24g1128 654 MobiDBLite consensus disorder prediction 73 110 - -
Lele24g1128 654 CDD DEADc_DDX3_DDX4 153 375 IPR044763 GO:0003724|GO:0005524
Lele24g1128 654 MobiDBLite consensus disorder prediction 84 101 - -
Lele24g1128 654 CDD SF2_C_DEAD 381 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1128 Lele-ChrLele24 9061371 9064997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1128 127 518 Eukaryotic Initiation Factors Gene Family AT3G13920 34.351 1.23e-58 201