LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele24g1104	ATGGGTATCACTGTTTTGGCTTTTATGCTATTACTGCAGTTGCCAAGAATTTTTGGCTTTGGGGATTTGTTGCATTCAAAGGATTGTGATGCGAATTGGGTAGCCTATTCATATTCTCATGGTCAAGACCTATTTTACATAAACGGGAATGTTGTTAGTAAAGACACTTTCTGCAAGACCCTTCAGTTGTATATGGTAAATGGTTGTGATGCGAAGTACTATTTTGGAAGTGCAAGCTGTGGGCTGGAAGTTTCTTTTGGACGAAAGCTTTTACTGAATGATATAAGCAATAACCCAACATTCCCAGGTCACAAGAACGTTTCTAAGCCCCTATCAGCCTCGAAAGTTGGTATAGCTGCAAGTGGAGTTTTGTTTGTATGTTGTGTTTTTCTCTGTCCTTGTTTCTATGGGAAGAGAAAAAAAGCCACTGCTCATGCTGGTCTATCCAAGGACCCAAATTCAATGGATTCAGCTTCCTCATTGGAAGGGAACTCTGTTTCTGAGAAGACCCAGGGCTCTCTCCATCGGGTACCACCTAGTCCTTCAAGATTTTCAATGTCCCCAAAACTCAGTAGACTTGGGCCAATACATCTCAACTTGAGTCAGGTTTTAAAAGCTACTCATAATTTCTCGAATAAATTACAAATAGGAGAAGGAGGTTTTGGAACTGTCTACAAGGCTCAGCTAGAAGGTGGTCAGGTTGTGGCAGTAAAGCGTGCCAAAAGGGAACAATTTGAGAATTTGAAAACTGAATTCAGCAGTGAAGTTGAACTTCTGGCCAAAATTGATCATCGAAACTTGGTGAAGTTACTAGGTTATATTGACCAAGGAAATGAACGCCTTCTTATTGCAGAGTATGTTCCGAATGGCACTCTTAGAGAACATTTGGATGGTTTGCGTGGAAGGATCCTTGACTTCAATCAGCGCCTTGAAATTGCCATTGATGTTGCTCATGGCTTGACCTATCTACATCGTTACGCAGAAAAGCCAATTATCCATAGAGATGTGAAATCATCCAACATTCTTCTAACGGAAAGTATGAGAGCTAAAGTTGCTGATTTTGGATTTGCAAGACTTGGTCCAATGGACTCTGATCAGACACACATCTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCAGATTACATGAAAACATATCAGCTTACTCCCAAGAGCGATGTTTATTCATTTGGAATTTTGCTTTTAGAAATTGTGACCGGCCGCCGTCCTGTGGAGGTGAAGAAACCTGTTGAAGAGAGGGTCACATTGAGATGGGCTTTCAGAAAGTATAACGAAGGAAATGTGGCTGAAATGGCGGATCCTTTAATGGAGGAAGGTGTAAATGGAGATGTTCTGATGAAGATGATTGGTTTAGCCATTCAATGTGCAGCCCCAAGTCGAGCTGATCGTCCTGACATGAAATCGGTGGGAGAACAATTGTGGACAATCAGGGCAGAATTCCTCAAGAGTTCAAAGAGGGTGTGA	1491	0.4172	MGITVLAFMLLLQLPRIFGFGDLLHSKDCDANWVAYSYSHGQDLFYINGNVVSKDTFCKTLQLYMVNGCDAKYYFGSASCGLEVSFGRKLLLNDISNNPTFPGHKNVSKPLSASKVGIAASGVLFVCCVFLCPCFYGKRKKATAHAGLSKDPNSMDSASSLEGNSVSEKTQGSLHRVPPSPSRFSMSPKLSRLGPIHLNLSQVLKATHNFSNKLQIGEGGFGTVYKAQLEGGQVVAVKRAKREQFENLKTEFSSEVELLAKIDHRNLVKLLGYIDQGNERLLIAEYVPNGTLREHLDGLRGRILDFNQRLEIAIDVAHGLTYLHRYAEKPIIHRDVKSSNILLTESMRAKVADFGFARLGPMDSDQTHISTKVKGTVGYLDPDYMKTYQLTPKSDVYSFGILLLEIVTGRRPVEVKKPVEERVTLRWAFRKYNEGNVAEMADPLMEEGVNGDVLMKMIGLAIQCAAPSRADRPDMKSVGEQLWTIRAEFLKSSKRV	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele24g1104	496	Gene3D	Phosphorylase Kinase; domain 1	182	286	-	-
	Lele24g1104	496	SMART	serkin_6	210	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele24g1104	496	CDD	STKc_IRAK	216	482	-	-
	Lele24g1104	496	Pfam	Protein tyrosine and serine/threonine kinase	214	482	IPR001245	GO:0004672\|GO:0006468
	Lele24g1104	496	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	99	488	-	-
	Lele24g1104	496	MobiDBLite	consensus disorder prediction	146	188	-	-
	Lele24g1104	496	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	287	496	-	-
	Lele24g1104	496	ProSitePatterns	Protein kinases ATP-binding region signature.	216	238	IPR017441	GO:0005524
	Lele24g1104	496	ProSiteProfiles	Protein kinase domain profile.	210	490	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele24g1104	496	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	331	343	IPR008271	GO:0004672\|GO:0006468
	Lele24g1104	496	SUPERFAMILY	Protein kinase-like (PK-like)	192	485	IPR011009	-
	Lele24g1104	496	MobiDBLite	consensus disorder prediction	150	187	-	-
	Lele24g1104	496	Gene3D	Transferase(Phosphotransferase) domain 1	287	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele24g1104	Lele-ChrLele24	8623914	8633104	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele24g1104	116	486	Receptor kinase-like Gene Family	AT3G46290	40.212	3.17e-75	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IV	Lele24g1104		PK_Tyr_Ser-Thr	1.6e-48	CL0016