Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1024 ATGGGTTTGGGAGTATTTGGTTTTATTTTGATTTTGACGCTTTTCTTCAAGCACTTGGCATGCCAGCAGCAACCAAATACAGATGGATTCTTTGTGTCTGAATTCTTGAAGAAGACAGGTTCATCTTCAAATTTTCCCAAATCCTACAACTTGTCTGGTTCTTCTTTCTGTTCATGGCGTGGTGTTCTCTGTGATGCTCAAAAAGAACACATCGTTGAGTTCAAAGCTTCTGGGTTAGGCCTCTCTGGGCTTATTCCTGATAATACCATTGGCAAGCTCAACAAGCTTCAATCTTTGGATCTTAGCAGTAACAAAATCACTGGGTTGCCTTCAGATTTCTGGAGTTTAACTTCTCTCATGAGTCTTAACCTTTCTTCTAACCAGATTTCTGGCTCATTGTCAAACAACATTGGCAATTTTGGTTCCTTGGAAACCTTAGACTTATCGAAAAACAATCTCTCTGAAGAAATTCCAGAAGCTATAGGTTCTCTTGTCAGTCTTCGTGTCCTCAACCTTAGCCAGAACGGGTTCGAACAGACGATACCTTCGGGGATTTTGAAGTGTCTGTCTCTTGTCTCAATTGATCTTTCATCAAATCGTCTAAATGGGACTCTTCCAAAGGGATTTGGTGCTTCTTTTCCAAATCTTCAAATTTTGAACCTTGCAGGGAATAGTATTCATGGTCGAGATTTTAACTTTTCTGGGGTGAATTCTATTACTACTCTGAATATGTCTGGAAATTTGTTTCAGGGATCAGTAATGGGTGCATTTCAAGGAAGCTTGGAGGTCATTGATCTTAGCAAGAACCAATTTCATGGTCATGTTTCTCAAGTACAATTCAATTCTAACTTCAACTTGTCTCATTTAGTTTATCTGGATTTGTCTGAGAATCAGTTTAGTGGTGAACTTTTCCATAATTTGAGTGAAGCCCAGAATCTGAAACACCTAAATCTTGCACACAATAGATTTAGTAGACAGAAATTCCCACAGATTAAGATGCTCTCTATGTTGGAATACTTGAACTTGTCTAGAACTAGTCTTGTTGGTCACATTCCTTATGAAATCTCACAACTGAAACATTTGAATGCTCTTGATATCTCTATGAATCATCTCGTCGGGAGAATCCCATTACTGAGCAACAAAAACCTCCGAATTCTTGACCTTTCTATGAACAATTTGAGTGGTGAAATACCCCAATCTGTCTTAGACAAGCTCCCAGGAATGGCTAAGTATAACTTCTCGTATAACAACTTCACCTTCTGTGATTCAACATTTACCTCTGAAATCCTCAAGAAGGCATTCTATGGATCAGTTAACAGTTGCCCAATTGCTGTAAACCCCCCACTTTTAAGAAAAAGAGGCACTGATCGAAACGGAATGAAGCTGGCTCTTGGATTGACTCTAGCAATGATCTGCCTTCTTGCTGGGCTTTTATTTCTGGCATTTGGCTGTAGAAGGAGGACACAAATGTGGGCAGTGAAGCAAGCTTCATACAAAGAAGAACAGAACATCTCAGGACCCTTTGAATTTCAGACCGATTCAACGACGTGGGTAGCTGATGTCAAGCAAGCAACTTTGGTCCCGGTAGTAATTTTTGAGAAGCCATTGTTGAACATCACATTCGCAGACCTCTTGTCTGCGACTTCGAACTTCGATAGAGGAACCCTTTTGGCTGAAGGGAAGTTTGGGCCTGTTTATAGAGGCTTTCTACCTGGTGGGATTCATGTAGCAGTTAAGGTTCTGGTTGTTGGCTCTACATTGACAGATCAAGAAGCTGCGAGGGAGCTCGAGTATCTCGGTCGGATCAAGCATCCCAATCTTGTTCCTTTAACTGGTTATTGTCTAGCTGGAGATCAGAGGATTGCTATATATGAATATATGGAGAATGGCAACCTGCAAAACTTGCTCCATGACTTGCCACTTGGTGTGCATAGTCCAGAAGATTGGAGCACAGACACATGGGAGGAAGATGACAATGGTGGTGGGATTCAAAACGCCGGCTCTGAGGGATTACTCACATCTTGGAGATTTCGTCACAAGATTGCCCTAGGCACTGCTCGAGCATTGGCCTTTCTTCACCATGGCTGCTCACCTCCAATCATTCACAGAGATGTCAAGGCCAGTAGTGTTTATCTGGACTACAACCTTGAACCAAGGTTGTCTGATTTTGGTCTAGCTAAGGTTTTTGGAGATGGCTTGAACGAGGAAATTGCTCGTGGCTCGCCCGGTTATGTTCCACCAGAGTTTTCCCAACCCGAACAGAACTCCCCAACACAAAAATCTGATGTGTACTGTTTTGGGGTTGTGCTGTTTGAGCTGATAACAGGTAAGAAACCTGTTGGGGATGATTATAATGATGACAAGGATGGAACTTTGGTTAGTTGGGTTAGAGGACTGGTGAGAAAGAACGAAGCTTCAAGAGCGATTGATCAGAAGATTCGTGACACGGGTTCAGAAGAACAAATGGAGGAGGTAATCAAGATCGGTTATCTTTGCACGGCTGATCTTCCATCGAAGCGACCAAGCATGCAGCAGGTAGTTGGGCTGCTTAAAGATATTGAGCCTTCTGCTACTCAATGA 2580 0.4225 MGLGVFGFILILTLFFKHLACQQQPNTDGFFVSEFLKKTGSSSNFPKSYNLSGSSFCSWRGVLCDAQKEHIVEFKASGLGLSGLIPDNTIGKLNKLQSLDLSSNKITGLPSDFWSLTSLMSLNLSSNQISGSLSNNIGNFGSLETLDLSKNNLSEEIPEAIGSLVSLRVLNLSQNGFEQTIPSGILKCLSLVSIDLSSNRLNGTLPKGFGASFPNLQILNLAGNSIHGRDFNFSGVNSITTLNMSGNLFQGSVMGAFQGSLEVIDLSKNQFHGHVSQVQFNSNFNLSHLVYLDLSENQFSGELFHNLSEAQNLKHLNLAHNRFSRQKFPQIKMLSMLEYLNLSRTSLVGHIPYEISQLKHLNALDISMNHLVGRIPLLSNKNLRILDLSMNNLSGEIPQSVLDKLPGMAKYNFSYNNFTFCDSTFTSEILKKAFYGSVNSCPIAVNPPLLRKRGTDRNGMKLALGLTLAMICLLAGLLFLAFGCRRRTQMWAVKQASYKEEQNISGPFEFQTDSTTWVADVKQATLVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDQEAARELEYLGRIKHPNLVPLTGYCLAGDQRIAIYEYMENGNLQNLLHDLPLGVHSPEDWSTDTWEEDDNGGGIQNAGSEGLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKVFGDGLNEEIARGSPGYVPPEFSQPEQNSPTQKSDVYCFGVVLFELITGKKPVGDDYNDDKDGTLVSWVRGLVRKNEASRAIDQKIRDTGSEEQMEEVIKIGYLCTADLPSKRPSMQQVVGLLKDIEPSATQ 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1024 859 PRINTS Leucine-rich repeat signature 96 109 - -
Lele24g1024 859 PRINTS Leucine-rich repeat signature 116 129 - -
Lele24g1024 859 SUPERFAMILY L domain-like 54 422 - -
Lele24g1024 859 Gene3D Ribonuclease Inhibitor 31 180 IPR032675 -
Lele24g1024 859 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 110 205 - -
Lele24g1024 859 Pfam Leucine Rich repeat 379 396 IPR001611 GO:0005515
Lele24g1024 859 ProSiteProfiles Leucine-rich repeat profile. 95 116 IPR001611 GO:0005515
Lele24g1024 859 CDD STKc_IRAK 557 853 - -
Lele24g1024 859 Pfam Leucine rich repeat 190 248 IPR001611 GO:0005515
Lele24g1024 859 Pfam Leucine rich repeat 85 129 IPR001611 GO:0005515
Lele24g1024 859 SMART LRR_typ_2 164 188 IPR003591 -
Lele24g1024 859 SMART LRR_typ_2 213 235 IPR003591 -
Lele24g1024 859 SMART LRR_typ_2 116 139 IPR003591 -
Lele24g1024 859 SMART LRR_typ_2 334 358 IPR003591 -
Lele24g1024 859 SMART LRR_typ_2 286 306 IPR003591 -
Lele24g1024 859 SMART LRR_typ_2 93 115 IPR003591 -
Lele24g1024 859 SMART LRR_typ_2 381 404 IPR003591 -
Lele24g1024 859 SMART LRR_typ_2 140 163 IPR003591 -
Lele24g1024 859 FunFam Calmodulin-binding receptor kinase CaMRLK 259 377 - -
Lele24g1024 859 Gene3D Ribonuclease Inhibitor 380 431 IPR032675 -
Lele24g1024 859 FunFam Putative LRR receptor-like serine/threonine-protein kinase 512 626 - -
Lele24g1024 859 Gene3D Transferase(Phosphotransferase) domain 1 627 859 - -
Lele24g1024 859 Pfam Protein tyrosine and serine/threonine kinase 555 848 IPR001245 GO:0004672|GO:0006468
Lele24g1024 859 ProSiteProfiles Protein kinase domain profile. 551 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele24g1024 859 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 285 421 - -
Lele24g1024 859 SUPERFAMILY Protein kinase-like (PK-like) 529 850 IPR011009 -
Lele24g1024 859 Gene3D Phosphorylase Kinase; domain 1 511 626 - -
Lele24g1024 859 Gene3D Ribonuclease Inhibitor 282 379 IPR032675 -
Lele24g1024 859 Gene3D Ribonuclease Inhibitor 181 281 IPR032675 -
Lele24g1024 859 Pfam Leucine Rich Repeat 166 188 IPR001611 GO:0005515
Lele24g1024 859 Pfam Leucine Rich Repeat 142 164 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1024 Lele-ChrLele24 7573409 7575988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1024 67 853 Receptor kinase-like Gene Family AT5G07280 32.386 7.26e-115 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lele24g1024 PK_Tyr_Ser-Thr 3.5e-35 CL0016