Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1023 ATGGCTGACCGTGAGAGCTCCGGAGCTCTCCTAGACGGTAATTCTGAACTGCAAGAACACAACGAATCAGCAGAAGAAAAGGGAGAGGAATTAAATCGAGTCTCTGAGGAACGGCCTCGCGAGTCGCAGCGAGGCGACTTGCAGAATTCTGAACCTTCACGTGAAGCAGAGCCACCGGAGCCTAATTCGGAAACCCTAGCTGTGCCCACTTTGCTTGAACCCGAAGAGAGAGATAAGAGTGCCGGTAATGAGTTGCGTGGTTCGCCCTGCAGAATTGCAGACGAGTTCTACTACGCAGGAGGCCTTGAAAGGCGAAAATCAGGTACGTGTCTTGAATTTTTTGAATTCTGCGTCTCCAGAAGTGAGTTCATAGTGACAAAATTGAAAATTATGGGACCAATGGTTAAGTCCTTTTTGTCTGTTCAAAATGAGCCAGTTGGACCTTCTGACAAGGAGCTTACTGAAAGAGAATCAGTCCAGACAACTCAAACACAGGTAGAAAATCAACTCCAGTTGGAGGTGTGTTCAAGTGCATTGTCGGAACTGTCACCAACATCTGTAACGCAATCTTTATCATCTGCTCCTAGTCCAGCTGTACCAGAACAAAGACAGTCTTCTCCAAAGGTTAATAATGCAATTGTGCTGCTGGAAGTAGACAAGGAAAAGCCTTCTTGCCATAATACCTTATCTCCTGTTTCTGTTGTGAGGGCTTCCACATCTGATGGATACAATTGGCGTAAGTATGGCCAGAAGCAAGTTAAAAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGAATGTTGTGCTAAGAAGATTGAATGCTGTGACCATTCAGGCCAAGTAGTAGAGGTTGTATATAAAAGCCAACACAGTCACGATCCACCACGGAAGACTAACTCCGGTAGAGAAAGTAAGTTTGCATCATCCAAACAGCCTAATGTGGAGAACATTGTTCTAGAGAAGCCCATCAGAGTGCTCAATGATTCAAATCCATGCCCTTCTTCAAATGAACCTCCACAAGGAGCACCATGCAGTGCTGATAGGAAAAGACAAAACTCATCTGATCAAATGGATAATGGTGAAGTTGACTTGAAGGATGATCATGTTATCAAGACAGAGCCGAAAAAAAGGCAAAAAGGTGACTATACATCCCTGGATTCTCCAGTAAAACCTGGAAAGAAACAGAAGTTTGTTGTACATGCAGCCGGAGATGTGGGGATATCAGGTGATGGATATAGATGGCGCAAGTATGGACAGAAAATGGATTCAAATGCAGTTAGGAGAAACTACTACAGATGCACTTCAGCTGGATGTCCTGTCCGTAAGCACATCGAGAATGCTGTAGATAGCTCTAATGCAGTAATCATTACATACAAGGGAGTTCATGACCATGACATGCCTGTGCCTAAGAAACGGCATGGCCCACCAAGTGCCCCTCTTTTGGCTGCAGCAGCACCTGTTTCAATGAACAATTCACCGCTATTCAAGAAAACAGACAAACTGCAGAAGCAAAAATCTTCAATGCAATGGTCGGTGGACACAGAAGGTGAATTAACTGGGGAAGCCTTGGAACTTGGGGGTGAGAAAGCAATGGAATCAGCTCGAACTCTCTTGAGCATCGGTTTTGAAATAAAGCCTTGCTGA 1653 0.4477 MADRESSGALLDGNSELQEHNESAEEKGEELNRVSEERPRESQRGDLQNSEPSREAEPPEPNSETLAVPTLLEPEERDKSAGNELRGSPCRIADEFYYAGGLERRKSGTCLEFFEFCVSRSEFIVTKLKIMGPMVKSFLSVQNEPVGPSDKELTERESVQTTQTQVENQLQLEVCSSALSELSPTSVTQSLSSAPSPAVPEQRQSSPKVNNAIVLLEVDKEKPSCHNTLSPVSVVRASTSDGYNWRKYGQKQVKSPTGSRSYYRCTHSECCAKKIECCDHSGQVVEVVYKSQHSHDPPRKTNSGRESKFASSKQPNVENIVLEKPIRVLNDSNPCPSSNEPPQGAPCSADRKRQNSSDQMDNGEVDLKDDHVIKTEPKKRQKGDYTSLDSPVKPGKKQKFVVHAAGDVGISGDGYRWRKYGQKMDSNAVRRNYYRCTSAGCPVRKHIENAVDSSNAVIITYKGVHDHDMPVPKKRHGPPSAPLLAAAAPVSMNNSPLFKKTDKLQKQKSSMQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1023 550 MobiDBLite consensus disorder prediction 331 353 - -
Lele24g1023 550 ProSiteProfiles WRKY domain profile. 240 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 MobiDBLite consensus disorder prediction 18 53 - -
Lele24g1023 550 MobiDBLite consensus disorder prediction 143 163 - -
Lele24g1023 550 Pfam WRKY DNA -binding domain 413 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 Pfam WRKY DNA -binding domain 241 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 MobiDBLite consensus disorder prediction 186 206 - -
Lele24g1023 550 MobiDBLite consensus disorder prediction 1 86 - -
Lele24g1023 550 SUPERFAMILY WRKY DNA-binding domain 238 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 SMART WRKY_cls 239 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 SMART WRKY_cls 411 469 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 SUPERFAMILY WRKY DNA-binding domain 407 470 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 MobiDBLite consensus disorder prediction 290 394 - -
Lele24g1023 550 MobiDBLite consensus disorder prediction 304 318 - -
Lele24g1023 550 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 169 500 IPR044810 GO:0003700
Lele24g1023 550 MobiDBLite consensus disorder prediction 354 386 - -
Lele24g1023 550 ProSiteProfiles WRKY domain profile. 406 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 Gene3D WRKY domain 230 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 Gene3D WRKY domain 396 471 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele24g1023 550 Coils Coil 14 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1023 Lele-ChrLele24 7560780 7566663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1023 152 550 WRKY Transcription Factor Family AT4G30935 51.733 8.69e-116 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele24g1023 WRKY 7.1e-18 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1023 24 7560780 7566663 Lele24g1023 24 7560780 7566663 ECH
Lele21g1030 21 7379277 7386937 Lele24g1023 24 7560780 7566663 hybridization
Lele22g1048 22 7468373 7474298 Lele24g1023 24 7560780 7566663 hybridization