Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1013 ATGGAGTTCAACTTTCTTGGTAATGATCTCAAGACGCCGTCTCTTCAATTCCTTTCTCCGATGAAAAGCCACTTCTCCGAGCCCTCCTTGTTGCGAGGTGGTTTTCCGAACACCGAGCAAATACTGAATGCGGACGTCGCCTGCGAAGATAAAGATATATTACTACGGAAGCTGGAGAAAGAGCGAATCAGGCGAGAGATAATCTCCGGCGAGATAACGAGGCGGCGAATGCTGGAGGAGGAAGTAAGAATAGAACTGATGCTGGAGAGAGAAGTGGCATTCCGAAGGAGTTTGGGAGAGAAATTCTTGCTTGATGAGCAAGTGGCGATGGGGTTGATGCCTCAAATCAAACTTGATCCAAAGATTAACATGGATAAATTGATCATGCTGGCTCAGCCAAACCCAGACATTTATAAAGAAAAGCGGAAAGCTGTAACACAAGAGGTTGATGACGATGATACGAAGCATTCTCCAGTTGTCGTGAAGAAAAAACCCAAGGATGACTGGAACTGTGCACTGTGTAATGTTGGTGTCACAAGTGAGAAATCTTTGAACGAACACCTTCAAGGTAAAAAGCACAAGGCCAAGGAATCTGCACAAAAGAGAACGCAGAAGAGTCCTAGCCCGTCATTTACATCGAAGAATAGCGAACAGTCTCTGAAGCCTACTGAAACCATTGCTACAGCTACTGAAACCATTGTTACTACTACAACTTCAGATCTGATGGAAGCAAAAGCTGATGCTCAAGCTCAACCTGAAATGACCATGGTAGACACAAATCAGACAGTGGTGGCAGGCAAAGATCTTGTGGGAGTCAAAACCAAAGATGAGGAGATTGTGGAGAAAACCCAAAACACAGAAGATTCAGAGAAGCAAAATGGGACTGGAACAGAACAGCAGGTAAGAATACCAGCTGCCGTGAAAAAAGGATTCAAGTTTTGGTGTGAACTCTGCCATGTTGGATCTTTCTCTGTGGTTGTGATGGAGAACCATAAGAGGGGGAGAAAACACACCAACCGATTAAAGAGATCGCGTCAAAATGATGAGAATGCTCCTCCCACATTTGCTGCAGTACCAGAAGCTACTCCATTGTTGACAAAAGATGCATAA 1110 0.4459 MEFNFLGNDLKTPSLQFLSPMKSHFSEPSLLRGGFPNTEQILNADVACEDKDILLRKLEKERIRREIISGEITRRRMLEEEVRIELMLEREVAFRRSLGEKFLLDEQVAMGLMPQIKLDPKINMDKLIMLAQPNPDIYKEKRKAVTQEVDDDDTKHSPVVVKKKPKDDWNCALCNVGVTSEKSLNEHLQGKKHKAKESAQKRTQKSPSPSFTSKNSEQSLKPTETIATATETIVTTTTSDLMEAKADAQAQPEMTMVDTNQTVVAGKDLVGVKTKDEEIVEKTQNTEDSEKQNGTGTEQQVRIPAAVKKGFKFWCELCHVGSFSVVVMENHKRGRKHTNRLKRSRQNDENAPPTFAAVPEATPLLTKDA 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1013 369 Gene3D Classic Zinc Finger 277 346 - -
Lele24g1013 369 Gene3D Classic Zinc Finger 143 201 - -
Lele24g1013 369 SUPERFAMILY beta-beta-alpha zinc fingers 312 343 IPR036236 -
Lele24g1013 369 SUPERFAMILY beta-beta-alpha zinc fingers 163 201 IPR036236 -
Lele24g1013 369 MobiDBLite consensus disorder prediction 332 369 - -
Lele24g1013 369 MobiDBLite consensus disorder prediction 202 224 - -
Lele24g1013 369 Pfam Zinc-finger of C2H2 type 313 337 - -
Lele24g1013 369 Pfam Zinc-finger of C2H2 type 169 193 - -
Lele24g1013 369 SMART ZnF_U1_5 166 200 IPR003604 GO:0003676|GO:0008270
Lele24g1013 369 SMART ZnF_U1_5 310 344 IPR003604 GO:0003676|GO:0008270
Lele24g1013 369 ProSitePatterns Zinc finger C2H2 type domain signature. 171 193 IPR013087 -
Lele24g1013 369 MobiDBLite consensus disorder prediction 184 224 - -
Lele24g1013 369 PANTHER OS06G0651300 PROTEIN-RELATED 51 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1013 Lele-ChrLele24 7465635 7467792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1013 171 345 C2H2 Transcription Factor Family AT5G61190 25.843 8.05e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1013 24 7465635 7467792 Lele24g1013 24 7465635 7467792 ECH
Lele22g1040 22 7396196 7400717 Lele24g1013 24 7465635 7467792 hybridization