Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1006 ATGACAAGGAAGGTGACCTCACGAACCATTTCCCTTCTTATTAACCTCTTCTTCTTCACTCACTCCATATTCATTCATCATCCATCACTCTCCCCCGCCCCGGCCGCCATGGAAGCCAGCGCTGGACTCGTCGCTGGGTCTCACAACCGCAACGAGCTCGTCGTCATTCACGGCCATGAAGAGCCGAAGCCTTTGAAGAATTTGGATGGCCAGGTCTGTGAGATATGTGGCGACGACGTCGGACTCACCGTCGACGGCGACTTGTTTGTCGCCTGCAACGAGTGTGGTTTCCCTGTTTGTCGTCCCTGCTATGAATATGAACGAAGAGAAGGCAGCCAACTCTGCCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGAAGCCCGAGGGTGGAGGGAGACGAAGATGAGGAGGACGTGGATGACATTGAACATGAATTCAAAATCGCAGCAGACGACAAGAACAAGCATAACCATATGGCAGAGGCCATGTTGCATGGCAAGATGAGCTATGGAAGAGGCCCTGAAGATGACAATGCCCAGTTCCCTCCCGTCATCGCTGGAAACCGATCCCGTCCAGTGAGCGGAGAATTCCCAATAGCATCTCATGCTTATGGTTATGGAGATCAGATGTTATCCTCTTCTCTTCACAAACGCGTTCATCCTTATCCAGTTTCTGAACCTGGAAGTGCCAGAGGGGACGAGAAGAACGATCAGGATGGGTGGAAAGATAGAATGGATGATTGGAAACTGCAGCAAGGAAACTTGGGGCCAGAACCTGATGAAGATCCAGAGGCAGCTTCGTTGGATGAAGCGAGGCAGCCATTGTCGAGGAAGGTGCCAATAGCATCGAGCAAGATTAATCCGTATAGAATGGTGATAGTGGCACGTCTTGTGATTCTTGCATTCTTCCTGAGATATAGAATTATGAACCCGGTTCATGACGCCATAGGGCTGTGGCTCACCTCCATTATATGTGAAATCTGGTTTGCTTTCTCCTGGATCCTTGATCAGTTCCCTAAATGGTTCCCCATTGATCGTGAGACCTACCTCGATCGTCTTTCCCTCAGGTATGAAAGAGAAGGAGAGCCAAATATGCTGGTACCGGTGGATGTGTTTGTGAGTACGGTGGATCCGATGAAGGAACCGCCATTGGTGACGGCGAACACGATTCTGTCGATATTGGCGATGGATTATCCGGTGGATAAGATATCATGCTACATATCAGACGATGGAGCTTCGATGTGCACGTTCGAAGCACTTTCAGAAACAGCAGAATTTGCGAGGAAGTGGGTTCCGTTCTGTAAGAAATTCAGCATTGAGCCTCGAGCTCCTGAGATGTACTTCTCTGAGAAGATCGATTACTTGAAGGATAAGGTTCAGCCCACTTTCGTCAAGGAGCGTCGAGCCATGAAGAGAGAATACGAAGAGTTCAAGGTGAGAGTGAATGCACTTGTGGCAAAAGCCCAGAAGGTTCCAGCAGGAGGATGGATAATGCAGGATGGGACTCCATGGCCAGGCAACAACACCAAGGACCATCCTGGTATGATCCAAGTCTTTCTCGGTCACAGTGGTGGCTGCGACACCGACGGCAACCTTCTTCCTCGTCTCGTTTATGTCTCCAGAGAGAAACGGCCTGGTTTTGCTCACCACAAGAAAGCCGGCGCCATGAATGCTCTCGTTCGCGTCTCTGCTGTTCTCACAAATGCCCCTTTCATGCTCAATTTGGATTGTGATCACTACCTTAATAACAGCAAGGCCGTCCGAGAGGCCATGTGCTTCTTGATGGATCCCCAAACTGGGAAAAAAGTCTGCTATGTCCAATTCCCTCAGAGATTCGATGGCATTGACAGGCACGATCGTTATGCCAACAGGAACACCGTCTTCTTCGACATTAACATGAAGGGTCTAGATGGTATTCAGGGACCTGTATATGTGGGGACTGGGTGTGTGTTCAGGAGGCAAGCTTTGTACGGATACAGTCCTCCGAAGGGTGCTAAACGCCCCAAGATGGTAAGTTGTGATTGCTGCCCATGTTTCGGACGCCGCAGGAAGCAAAAGTATGAGAAGGATGGTGCAAATGCAGAGTCTGCAATGCTGCAACAAGGAATGGAAGATGATAAAGAGTTGCTCATGTCTCAGATGAATTTTGAGAAGAAATTTGGGCAATCATCTATTTTTGTGACTTCAACTTTGATGGAAGAAGGTGGTGTGCCTCCTTCCTCAAGCCCATCAGCCCTGCTCAAAGAAGCCATTCATGTCATAAGTTGTGGCTATGAGGATAAAACCGAATGGGGAACTGAGCTGGGTTGGATCTATGGATCTATTACAGAGGATATCCTAACAGGTTTCAAGATGCATTGCCGTGGTTGGAGATCTATTTACTGCAATCCAAAGAGGCCTGCATTCAAGGGTACAGCTCCAATCAACTTGTCAGATAGGCTGAACCAGGTGCTTCGTTGGGCGCTGGGTTCTATTGAGATCTTCTTCAGTCCCCATTGCCCTGCATGGTATGGCTACAAGGGTGGCAACAAGCTCAAGTGGCTCGAGCGATTCGCCTATGTCAACACCACTGTCTACCCCTTCACCTCCCTCCCTCTACTTGCTTACTGTATTCTTCCTGCTATTTGCTTGCTCACTGACAAGTTCATCATGCCACCGATAAGCACTTTTGCCGGTTTGTACTTTGTTGCTTTGTTCTCTTCCATCATCGCGACGGGCCTGCTTGAGTTGAAATGGAGTGGAGTGAGCATAGAGGAATGGTGGAGGAATGAGCAATTCTGGGTGATTGGTGGTGTATCAGCACATCTATTTGCTGTCATACAAGGTCTTTTGAAGGTGCTAGCCGGAATCGACACAAACTTCACCGTTACATCGAAGGCAGCAGATGATGAGGAATTCGGAGAATTATACACCTTTAAATGGACCACTCTCCTAATCCCACCAACTACTGTACTCATCATCAACATTGTTGGTGTTGTTGCTGGAATCTCAGACGCAATCAACAATGGCTACCAATCTTGGGGACCCCTATTTGGAAAACTCTTCTTCTCCTTCTGGGTTATTGTTCATCTCTACCCCTTCCTTAAAGGTTTAATGGGCAGACAAAACAGAACACCCACCATTGTTGTGATTTGGTCAGTGCTTTTGGCTTCTATTTTCTCTCTACTTTGGGTGAGAATTGACCCATTTGTGATGAAAACTAAGGGGCCTGATACAAAGATGTGTGGAATCAACTGCTGA 3243 0.4826 MTRKVTSRTISLLINLFFFTHSIFIHHPSLSPAPAAMEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFKIAADDKNKHNHMAEAMLHGKMSYGRGPEDDNAQFPPVIAGNRSRPVSGEFPIASHAYGYGDQMLSSSLHKRVHPYPVSEPGSARGDEKNDQDGWKDRMDDWKLQQGNLGPEPDEDPEAASLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRIMNPVHDAIGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLVPVDVFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRVNALVAKAQKVPAGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGCDTDGNLLPRLVYVSREKRPGFAHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYLNNSKAVREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYSPPKGAKRPKMVSCDCCPCFGRRRKQKYEKDGANAESAMLQQGMEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPSALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCNPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSPHCPAWYGYKGGNKLKWLERFAYVNTTVYPFTSLPLLAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKMCGINC 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1006 1080 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 145 IPR013083 -
Lele24g1006 1080 Coils Coil 468 488 - -
Lele24g1006 1080 MobiDBLite consensus disorder prediction 171 191 - -
Lele24g1006 1080 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 273 1047 - -
Lele24g1006 1080 MobiDBLite consensus disorder prediction 220 273 - -
Lele24g1006 1080 SUPERFAMILY RING/U-box 57 141 - -
Lele24g1006 1080 FunFam Cellulose synthase 487 661 - -
Lele24g1006 1080 CDD mRING-HC-C4C4_CesA_plant 71 121 - -
Lele24g1006 1080 MobiDBLite consensus disorder prediction 231 250 - -
Lele24g1006 1080 Pfam Cellulose synthase 370 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lele24g1006 1080 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 531 661 IPR029044 -
Lele24g1006 1080 ProSiteProfiles Zinc finger RING-type profile. 73 119 IPR001841 -
Lele24g1006 1080 Pfam Zinc-binding RING-finger 63 140 IPR027934 -
Lele24g1006 1080 SUPERFAMILY Nucleotide-diphospho-sugar transferases 383 860 IPR029044 -
Lele24g1006 1080 FunFam Cellulose synthase 55 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1006 Lele-ChrLele24 7387471 7393741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1006 37 1080 Cell Wall Biosynthesis AT5G17420 85.086 0.0 1826