Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0966 ATGGGAAGACGAAGTAGAACTCTAGCACAACTTAAAAACGAAGCCTTTGAGCCTCCTCCTTCAGAACAACCACCACCGTTCTATCTCTCTCAGCCACATCTTCCTTCTTCATCTTCTTCACCACCAAATTTTGGATCTGATACCAATGGTTTCTTGAATTTAAACGACAAGGTAAGTCCAAGCATGCTACTTGTAATCATAATTCTGGCCATTGTGTTCTTCATTTCTGGGTTGATTCACCTGTTAGTTAGATTCCTTTGGAGACCCAGAGAACCAGATGATTTGGACAATGTGTCTGCTCTTCAAGGTCAATTACAGCAACTGTTTCATCTTCATGATGCTGGCGTTGACCAGTCTTTCATAGATAACACCCTCCCTGTGTTCCATTACAAAGCAATCATAGGACTGAAAGACCCATTTGATTGTGCTGTGTGCTTGTGTGAATTTGAAGCTGATGATAAACTCAGATTGTTACCCAAATGCAGCCATGCTTTTCACATGGAATGCATTGATACTTGGCTCTTGTCTCACTCAACTTGCCCTCTCTGTAGAGCTAGCTTGCTCTCTGCTGATTTCTCTCCCATCACAAACAACGCTTCTTCGTATTCTTCTCCTTTCGTCTTCGTTCTGGAATCTGGGAGTGAAAGTTCCACAGAGATTATTGTCCCAGAAAGAGAGAGTAGGACCAGTTCTGTGATTGCAGATAACGAACATGTAGATTTGTCACACAAATCTGTTGATTTGAGTTCAGATTCTGGTAATCATGTTGGGGAATCACATGAGAAAGTGGTCACTGTGAAGCTGGGAAAGGTCAGGAATGTGGACCGTGTTGTTGGTGAAGGAAGAAGCAGTGAAGCAGACATGGGAGGAGGAGAAGCTAGAAGGTGTCTTTCAATGGGGTCATTTGCTTATGTTATGGACGAGAATTCTTCACTTCAGCTACCAGTTAGAGCGACGATGAAGAAGCATTCAAGCAAGAAACCTGCTTTACCTTTAACACCAGGACGAAGGATTGCCTTGTCAGAATGTGACTGTGAATCCACGAGAGATTTCAAGTTCACAGGTTTTGAAGCAGTGAAAGGTGTTGATGAGAAGAATTCTTCTGAAACTGCAAGTATTGAGATAAGCAGAAAAGAGAGCTTTTCAGTTTCAAAGATTTGGCTTCGAGGAAAGAAAGAGAAGCCACAAGCCATGGCTGATGATTCTTCCTCAAGGAGGGCTGTTTCGTTTCGATTTGCAGCAGCAAGGGATGATGATGATGATTCGAAGGAGAAGAATCAGAAATCTGAGATTTTGGAGATTGAGAATAATGATGAAAACCAGAGCTGTTACAGTGTGGATTCTCAGGGCAGAGCACCGTCTTTTGCAAGAAGAACTCTGCTCTGGCTCACCGGGAAACAGAACAAGGTTGTTCATTCATCTTGTGATTCAAACTTGTAG 1440 0.4271 MGRRSRTLAQLKNEAFEPPPSEQPPPFYLSQPHLPSSSSSPPNFGSDTNGFLNLNDKVSPSMLLVIIILAIVFFISGLIHLLVRFLWRPREPDDLDNVSALQGQLQQLFHLHDAGVDQSFIDNTLPVFHYKAIIGLKDPFDCAVCLCEFEADDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLSADFSPITNNASSYSSPFVFVLESGSESSTEIIVPERESRTSSVIADNEHVDLSHKSVDLSSDSGNHVGESHEKVVTVKLGKVRNVDRVVGEGRSSEADMGGGEARRCLSMGSFAYVMDENSSLQLPVRATMKKHSSKKPALPLTPGRRIALSECDCESTRDFKFTGFEAVKGVDEKNSSETASIEISRKESFSVSKIWLRGKKEKPQAMADDSSSRRAVSFRFAAARDDDDDSKEKNQKSEILEIENNDENQSCYSVDSQGRAPSFARRTLLWLTGKQNKVVHSSCDSNL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0966 479 CDD RING-H2_PA-TM-RING 141 184 - -
Lele24g0966 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Lele24g0966 479 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 55 387 - -
Lele24g0966 479 Pfam Ring finger domain 141 184 IPR001841 -
Lele24g0966 479 SMART ring_2 142 183 IPR001841 -
Lele24g0966 479 SUPERFAMILY RING/U-box 123 189 - -
Lele24g0966 479 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Lele24g0966 479 FunFam RING-H2 finger protein ATL46 103 189 - -
Lele24g0966 479 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0966 Lele-ChrLele24 6895521 6896960 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0966 53 474 C3H Transcription Factor Family AT2G18650 48.630 1.90e-98 301