Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0948 ATGAAGTTCAATTTTCGTCCTCGTTTCTCATCTCGCAACAACGGCTCCAACCGAAACCAAACTGATCATCCACAAACCTCGGACTCTTCCGAATGTTCAGGGTTCACAGTGACCTTAGTTCTTGCTGCTGTTTCCGTTACCGCTGCTGTTTCCGCTCCGCTCAAGCTTCAAACTTTTGAAACCCCAACCTCCGAGAACTTCATGCGAGCTGTTCAAAGTGCAGTGTACTTATTCAAGACGAAAATGAAAACTTGGAACTCCAAGCTTCGTGAGCTTGAGGCATCCCTCAAGTCATCCTTAGAGAAATGCGCCTCTGAGAGGCAAGGCCGCATTAGGGCACAACAGTCCTTGAGAAAAGCACTAACACAACCTAAAAACGTAGAGATGAATTACTATCCCATGGCACCTATTGGCATCATCCAATCATGCTTCTCTACAAGAAATGGAACGCCAAGGCAACCATTACTTGTACCTCTTGCTAGAGCATCTTTGATTTTCAATACAACTCGTGTACCACCATCTTCACTTGAGGGTCTTGCAGAATATTCTCATTGCTGGGTTATATATGTATTTCATCTAAATACAGATCTTGAGAAGCTATGGAATCATCCATCTAAGTCAAAGTTCAAGGCAAAGGTGAGGGTTCCAAGATTGAAAGGTGGAAGAAAGGGACTGTTTGCCACACGATCCCCACATCGTCCATGCCCCATTGGATTGACTGTTGCTAAGGTGGAGGCTGTCCAGGGAAATATGCTTTTGCTCTCTGGTGTGGACCTGGTTGATGGAACTCCAGTGCTTGATGTCAAGCCCTATCTACCATACTGTGACAGCGTTGTGGAAGCAAAAGTGCCTAGTTGGTTGATGGAAGATAACTTACTTGCGGTAGCTTCTATAAACTTCTCAGAGGACTTTACTTCAACCCTAGAGAATTGCTGGAGAATATCAGTGGATAAATATCTTGTTCGAGAAAGAGAAAAGAAATCACTTTATGCATCAGCAGGCGAATTCCAAAGCTTAATAAAACAGGTTCTTTCGTGGGATATTCGGTCAGTTAGTCAATGGAAGAGACCTCATGATGCCATCTCGAAGAAAGACAATGATAAACAGATGGGTGACCCTTCTGATGTAGATGAGAGCCTAGATGAAGCAACTTCTGTGCTTGAAAGAGAGGAGAATTCTCTATATTCCAAGGAAGTAACTTATCACCTTATTTTGGAGGGACTGGATGTCTCCTATAGAATTGATGACAATAGTAATGTCATCGTAGAAAAGGTGTCACCTTTCGCTGGCCTAAGCAATGATCCTAATTCTGTAGCTAGATATAAAGTACACTTTACTGTGGCTGATGATACTGGAACTACATCGGTTGTCCTTTTCGATGGTGTTACCTCAAGGCTATTGAACAAAAGTGCTAAGTTCTTAAAGGACCAATTGATTTCGCACAGATCATCAAGCATTAGTGTCCAGGATCTATCTGATGATGCCGACATCATTAGAGAATTCACTCTTTCTGATCCCCAGGTTAGAAATTCCTTCTTGGATGCCAAGGCTTTGTTGGCTTAG 1563 0.4299 MKFNFRPRFSSRNNGSNRNQTDHPQTSDSSECSGFTVTLVLAAVSVTAAVSAPLKLQTFETPTSENFMRAVQSAVYLFKTKMKTWNSKLRELEASLKSSLEKCASERQGRIRAQQSLRKALTQPKNVEMNYYPMAPIGIIQSCFSTRNGTPRQPLLVPLARASLIFNTTRVPPSSLEGLAEYSHCWVIYVFHLNTDLEKLWNHPSKSKFKAKVRVPRLKGGRKGLFATRSPHRPCPIGLTVAKVEAVQGNMLLLSGVDLVDGTPVLDVKPYLPYCDSVVEAKVPSWLMEDNLLAVASINFSEDFTSTLENCWRISVDKYLVREREKKSLYASAGEFQSLIKQVLSWDIRSVSQWKRPHDAISKKDNDKQMGDPSDVDESLDEATSVLEREENSLYSKEVTYHLILEGLDVSYRIDDNSNVIVEKVSPFAGLSNDPNSVARYKVHFTVADDTGTTSVVLFDGVTSRLLNKSAKFLKDQLISHRSSSISVQDLSDDADIIREFTLSDPQVRNSFLDAKALLA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0948 520 Coils Coil 82 102 - -
Lele24g0948 520 FunFam tRNA (Adenine(37)-N6)-methyltransferase isoform A 133 289 - -
Lele24g0948 520 ProSiteProfiles TsaA-like domain profile. 134 280 IPR023370 -
Lele24g0948 520 SUPERFAMILY YaeB-like 129 360 IPR036413 -
Lele24g0948 520 MobiDBLite consensus disorder prediction 359 380 - -
Lele24g0948 520 PANTHER UNCHARACTERIZED 71 427 IPR040372 -
Lele24g0948 520 TIGRFAM tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 130 282 IPR023370 -
Lele24g0948 520 MobiDBLite consensus disorder prediction 359 375 - -
Lele24g0948 520 SUPERFAMILY Nucleic acid-binding proteins 435 477 IPR012340 -
Lele24g0948 520 Gene3D - 133 290 IPR036414 -
Lele24g0948 520 CDD UPF0066 136 271 IPR023370 -
Lele24g0948 520 Pfam tRNA-methyltransferase O 149 276 IPR023370 -
Lele24g0948 520 Gene3D - 423 501 IPR012340 -
Lele24g0948 520 MobiDBLite consensus disorder prediction 7 31 - -
Lele24g0948 520 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0948 Lele-ChrLele24 6746504 6753713 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0948 24 6746504 6753713 Lele24g0948 24 6746504 6753713 ECH
Lele21g0967 21 6749351 6755809 Lele24g0948 24 6746504 6753713 hybridization
Lele22g0973 22 6826576 6833243 Lele24g0948 24 6746504 6753713 hybridization