Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0940 ATGGGAATTGAAAGAGGAGGCCTTAAGGGCTTACGTGGTGGGTGGAGCGTCCCCGCGAAGCCATGCGACTCCTGCAAATCGGCCGCCTCCGCCGTGTTCTGCCACGCCGATTCCGCCTTCCTCTGCATGGCCTGTGACTCCCGAATTCACTGCGGTAATAAGCTTGCTTCCCGCCACGAGCGTGTTTGGATGTGCGAGGTTTGTGAGCAGGCCCCTGCTTCCGTCACGTGCAAGGCCGACGCCGCCGCTCTCTGCGACACTTGCGATTCTGACATCCACTCCGCCAACCCACTTGCTTGCCGTCACGAGCGCGTCCCGGTGGAGCCCTTTTATGACTCCGCTGAGTTGGTGGTGAAATCCTCTGCCGCCGTTGCTGCTTTCAACTTCTTCGTCCCCATCGATAACAACGGGATTTGCTCCGATGGGTTCCAAACCGACGATCCCGAACCAGTTCCGTGGATGGTCCCCAACCAGAATTTCAATTCCAAGGTCGTGTGTGCTCCGGAAGTCAAGTCCGGCGACATGTTCTTCACGGAAATGGATCCGTTTATGGATTTCGATTACTCCAATTCTTATCAGAATAACGGCAATCACGACGCGGCAAACGACAGCGTGGTGCCAGTTCAAAACAAGCCTGGTACGGCTCCGATGATCAATCACTCGGAGAGTTGCTTCGATATTGATTTTTGCAGATCGAAGCTTTCTTCTTTTAGCAGCTACCCAAGCCAAAGTGTTTCGTCGTCTTCGCTTGATGTTGGGGTTGTACCAGACTCTGTGTCAGAAATGTCGTTCTCCTTGGGGCGAAACAAGAGCAACAGCTCCGAATCCGGCGGAAACGGGTCGGCGGGTAACAACCAGGCGACCCAACTGGGCGGGATGGACCGGGAAGCGAGGGTGTTGAGGTACAGAGAGAAAAGGAAGAATCGGAAGTTCGAGAAAACCATCCGATACGCTTCAAGGAAAGCGTACGCAGAGGCCCGACCCAGGATCAAGGGTCGGTTCGCTAAACGGATCGAAACCGAATCGGAGGTAGACCGGGTGTACAGACCCGTCAGCTCGGGGGGTCTGATGATGGACGCTCAGTACGGCGTCGTACCATCGTTTTAA 1107 0.5528 MGIERGGLKGLRGGWSVPAKPCDSCKSAASAVFCHADSAFLCMACDSRIHCGNKLASRHERVWMCEVCEQAPASVTCKADAAALCDTCDSDIHSANPLACRHERVPVEPFYDSAELVVKSSAAVAAFNFFVPIDNNGICSDGFQTDDPEPVPWMVPNQNFNSKVVCAPEVKSGDMFFTEMDPFMDFDYSNSYQNNGNHDAANDSVVPVQNKPGTAPMINHSESCFDIDFCRSKLSSFSSYPSQSVSSSSLDVGVVPDSVSEMSFSLGRNKSNSSESGGNGSAGNNQATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAEARPRIKGRFAKRIETESEVDRVYRPVSSGGLMMDAQYGVVPSF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0940 368 SMART bboxneu5 17 64 IPR000315 GO:0008270
Lele24g0940 368 SMART bboxneu5 65 107 IPR000315 GO:0008270
Lele24g0940 368 CDD Bbox1_BBX-like 21 64 - -
Lele24g0940 368 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Lele24g0940 368 MobiDBLite consensus disorder prediction 264 291 - -
Lele24g0940 368 CDD Bbox1_BBX-like 65 107 - -
Lele24g0940 368 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Lele24g0940 368 MobiDBLite consensus disorder prediction 264 296 - -
Lele24g0940 368 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 347 IPR045281 GO:0009909
Lele24g0940 368 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Lele24g0940 368 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515
Lele24g0940 368 Pfam CCT motif 295 337 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0940 Lele-ChrLele24 6680862 6682092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0940 1 368 C2C2-CO-like Transcription Factor Family AT5G57660 52.770 5.26e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele24g0940 zf-B_box 1.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0940 24 6680862 6682092 Lele24g0940 24 6680862 6682092 ECH
Lele21g0962 21 6697909 6699870 Lele24g0940 24 6680862 6682092 hybridization
Lele22g0967 22 6760881 6762117 Lele24g0940 24 6680862 6682092 hybridization