Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0927 ATGGCCACGAACTTCCGTTCTTCATCTTCTTCTAACACTTCTTTTCATCATAATCATCATCCTTCAAGTGATTATATGAATAACCTTAACCTAGATCTTCTGCTTGAGCTTTCTTCATCTTCTCCTCCAGCTGCTAATAATTACAGTACTATCGAGCCTCGGGTTTTCTCCTGCAACTATTGCCAGAGAAAGTTCTACAGCTCACAAGCTCTGGGAGGTCACCAGAATGCCCACAAGCTGGAGAGAACACTGGCCAAGAAGAGCAGAGAGCTCAGCTCAATGCAGAATTTTGGGCTCGTCTCTGATCATGACAGGTCTAGCAGTACTAGCAGCAGCTTCAATAATGGCTCGAACCATCTAGCGCGTGTCGGCTCACTAAGCCATGGCGAAGCAGCTGGTGGGATTAGCTATGAAAGACGAGAGTTTATTAGCTATGGTGGTTCCAACAACCCCAGGTCGTCTTCTGGTTACTTGTCTGAAAGCAGGAATGTTCAGCAGGAAGATATTGGTCAACTTGACTTGTCTTTAAGGCTTTAG 537 0.4544 MATNFRSSSSSNTSFHHNHHPSSDYMNNLNLDLLLELSSSSPPAANNYSTIEPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSSMQNFGLVSDHDRSSSTSSSFNNGSNHLARVGSLSHGEAAGGISYERREFISYGGSNNPRSSSGYLSESRNVQQEDIGQLDLSLRL 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0927 178 SUPERFAMILY beta-beta-alpha zinc fingers 53 83 IPR036236 -
Lele24g0927 178 FunFam Zinc finger protein 2 35 105 - -
Lele24g0927 178 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Lele24g0927 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Lele24g0927 178 Gene3D Classic Zinc Finger 44 115 - -
Lele24g0927 178 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 170 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0927 Lele-ChrLele24 6546405 6546941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0927 28 178 C2H2 Transcription Factor Family AT5G57520 45.161 3.88e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele24g0927 None None None