Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0906 ATGGAGGACTCCCCTCCGTCAGAAGATGTATTCAGGGTGGGCCAACGAGTACATGCATCTGGTGATTCACGGAGAATTGGTACAGTTAAGTATGTGGGGCCTGTTGAAGGCCATCCTGGCACATGGGTTGGAGTTGATTGGGACAATGGAGATGGAAAACATGATGGATCCAACAAAGGGATCCGATACTTTCATGCAAAGTCTGAAAGATCAGGGTCATTTGTTCGTCCCCAGAATTTGAGCCAAGGCATTTCATTAGTGGAGGCTCTTGAAATCAGATATCGGGGCGACTCCAGTAAAGATGAAGAGGATGAAATGTATGTCCTTTCGGCTAGCAACAGGCGAGTCTCTATACAACTTGTAGGAAAAGATAAAGTTAAGGATAAACTAAGTCGATTTGAGGAGTTGACCAGGGCATCACTATCATATATGGGGGTTAGTTCCCCTGGAATTCCATATCATATCAATACTACGATTCCAAATACGAAGGAACTTGATCTGACTGGAAATTTGCTTTCTGAGTGGAAGGATGTTGGCGCAATTTGTGAGCAGTTGCCTCTTCTTTGGGCACTCAACTTATCAAACAACTTCATGTCACCATATACATCAGGGCTTCCTTTAGTGAAGAACATCCTTGTTCTGGTTTTAAATAATACTGCTGTAGATTGGGTGCAGGTTCAACTGCTTGGACAGTCATTGCCAACTCTTGAAGAGCTACATCTTATGGGAAATAATATAAGCAGAATACTGCCTACGTCTTCCACTGTGGTTGAGGGATTTGATTCTTTGCGGCTGTTGAATTTGGATAATAATTGTATAGCTGAATGGGAAGAAATCATGAAGCTATCTCAGCTAAGAAGTTTGGAGCAGCTTTATTTCAACAAAAATTGTTTGAACTGCATCCATTATCCTGACCATGCTGGGAAGTATGAATCGGAAGTTATTTGCCATAAGCCTTTTCAGAGTTTACACTGTCTTTTATTAGGTGGCAACAACATCGGAGATCTGGCTTCTATTGATTCATTGAATTTGTTCCCTAAATTGGTGGAAGTCAGGCTTTCTGAAAACTTAATTACTGATCCTGCAAGAGGTGGAGTTCCCCGATTTGTTTTGATTGCAAGATTAGCAAAAATTCAGATTCTGAACGGGAGTGAGATTAGCCCTCGAGAGAGGAAGGACTCAGAGATTAGGTATGTACGGTTGGTGATGTCAAGGTCGCTTGCTAATCCTGAAGAAATCAAACAGCATCCCAGGTTTTCTGAACTCAAGAAATTTTACGGAATTGAAGAGGAAATGCCCTCAACTGGAACTTCAGGCCCACAAACAATGGCTTCAGGACTCCTGTCTATCACTCTGAAGTGTGTGGGACCATCCATGGGTGAGAAGCCACCATTGACGAAGAAACTGCCAGCAACAACAATAGTTGGGAAGCTAAAATTGCTGTGTGAAAGCTTCTTTAAGCTGCAGTCCGTGAACCTAAAATTATATCTTCAAGAAGAGGGCTCTCCCATGCCTCTTTTGCTTGACAATGACATGGAATCTTTCTTTGACATTGGAATTGGCAATGAATCGATTATCCTTGGAACAATACAGAGAGAAAAGATGGCTAAAGGTTTGAAGAAAAGCAATTTTGAAGTTCTGGGAATGTGTTGTAATTCAGAGGTGGCTCTGATTGAAAAGATTCTGAAGGGTCTCCATGGAGTGAAGGAGATTTCAGTCATGTTCCCGACCAGAACAGTCACTCTAGTCCATGATCTTGATCTAATCTCAGAGTCACAAATCACTGATGCACTGAACATGGCAAGGCTTGAAGCTAGTTTGAAACCAGAAGGAGAGACTAAGCATGAAAAGAAATGGCCAGCAACAAGTACTTTGGCTTGTGGCTTGTTACTTGCACTTTCTTTTTTGAAGTATGTTTATCTACCTTTGGAATTCTTTGCTATTGGTGCTGTTGTTGTGGGTTCCCCTAGAATTCTATTAAGAGGCATAGCTTCCATCAGGAATCTCTCCCTTGATATCAACATTCTGGTTCTATTGGCAGTGTTTGGTACTCTTGCTCTCGGAGATTTCTTGGAATCTGGAATCATCACCTTCCTATTCTCCATTGCTCAATGGCTAGAGACTGTAGCAAGTTACAAGGCTATGGCCACTATGTCCTCTTTAACAAACATGACTCCTCAAAGGGCAATTATTGCTGAGACTGGTGATCAAGTTGATGTCAATGAAGTTAAAATCAACACTGTTCTTGCAGTCAAGGCTGGTGATGCTATTCCTCTTGATGGTATTGTCGTCGAAGGGAAATGTGAAGTCGATGAAAAAATGTTGACCGGAGAGTCATTCCCTGTCACCAAAGAGTTAGATTCAACTGTTTGGGCAGGCACTATTAATCTAAATGGTTATATCAGTGTGAAAACAACTGCATTGGCAAAAGACACAGCAGTGGCAAGAATGACAAAGGTTGTTGAAGAGGCTCATGGCAGAAAATCCAGAGCTCAAAGATTCATAGATACCTGTGCAAAGTACTATGTACCTGGGGTTTTCTTGATATCAGTTGGTGTTGCTGTGATTCCCATGGCATTAAGGGTTCCCAACATTAAGTATTGGGGTCACATGGCTATTGTGATTTTAGTAAGTGCATGCCCTTGTGCTCTTATTCTCTCCACACCTGTTACAATCTTCTGTGCCCTCACAAAAGCTGCCACAAGTGGGTTGCTTCTTAAAGGTGGAGATTATGTAGAAGCACTTGCTGGGATTAAGATCCTGGCTTTTGATAAGACTGGCACATTGACAAAAGGGGAGTTCACTGTCACAGATTTTTCTGCCGTTGGAGATTATGATGTTAACAGTCAACTGTTACTTTACTGGGTTACTAGTATTGAGAGTAAATCAAGTCACCCTATGGCAGCTGCGCTTTTGGAATATGGAAGGCTACATGGTATCAAACCAATCCCTGAAAATGTGGAGGATTTTCAGAATTTTCCGGGAGAAGGAGTTTACGGTAAAATCAATGGGAAAGATGTTTATATTGGCAACAGGAAAATATGTGTGAGAGCTGGCTGTGAAAGTGAGTTTCTAAGCAAAGAAGAAAGAAATGGTTATATATGCTGTGGACCAACTCTAGTTGGAGCGTTCAGCTTATCAGATACATGTAGATATGGAGCTTTAGAGGCAATAGAGGAGCTTAAGTCATTAGGAGTGAAATCAGCAATGCTGACAGGAGACAGCACTCGTGCGGCTACACTTGTTCTAAATCAGTTGAATCATGCTCTAGACATAGTCCATGCAGAGCTTCTACCACATGAAAAAGCAGTGATCATTGAGAATTTCAAGAAAGATGGGCTGATGACAGCGATGGTTGGAGACGGTATAAACGATGCTCCAGCATTAGCCACAGCTGACGTGGGCATCTCAATGGGGATCTCAGGTTCAGCCCTTGCAGTAGAGACAGGGCAAGCAATTCTCATGTCAAACGACATCAGGAAAATACCTGAAGCAATTCATCTTGCAAGAAGAACTTTCAGAAAGCTCATTCAGAATGTCGTTTTCTCTGTTGTTACAAAGGCTTTGATCCTAGCTCTGGCACTAGCAGGTTACCCACTGGTTTGGCTCGCCGTTTTGACTGATGTTGGAACCTGCTTGCTTGTGATTCTCAACAGCATGTTACTTCTGAACGAGAAAAAACACAAGAATAAAAGAGTACCCAGTAAATCCAAATATGGGTTGTTCAATAAGGATAAGAAGGAGCCATTACTTGAAAAGAAAATGGATTGTGGTGAAGGATGCTGCAGTAATGTGTCTTGTGAAGTGACCATTCCTAGTACCGCAACTGAATGCGAAAAAGCTTCTTGTTCAAATTCTGGGGCTTGTGGGAAAGGGGTCTCAGACGATATTGGAAGATCAGAGAGTTGCAACGATGGGTGTTGTGGAAAAGTAAGGCGTGAGGAGGAGGAGTCTTCATGCAGAAAGAAGAGTAGATGTAGCTCTTATTGTTGCAAGCCGAAGAACACAGAAGTGAAGGTGGATACAGAAAAGTGTGGAAGCCAACAATGCTGCAAAGAATCAAGGAACATATGCTGTGTTGATGGTTATAACATGCCAGAAATTGTGATTGAGTGA 4116 0.4215 MEDSPPSEDVFRVGQRVHASGDSRRIGTVKYVGPVEGHPGTWVGVDWDNGDGKHDGSNKGIRYFHAKSERSGSFVRPQNLSQGISLVEALEIRYRGDSSKDEEDEMYVLSASNRRVSIQLVGKDKVKDKLSRFEELTRASLSYMGVSSPGIPYHINTTIPNTKELDLTGNLLSEWKDVGAICEQLPLLWALNLSNNFMSPYTSGLPLVKNILVLVLNNTAVDWVQVQLLGQSLPTLEELHLMGNNISRILPTSSTVVEGFDSLRLLNLDNNCIAEWEEIMKLSQLRSLEQLYFNKNCLNCIHYPDHAGKYESEVICHKPFQSLHCLLLGGNNIGDLASIDSLNLFPKLVEVRLSENLITDPARGGVPRFVLIARLAKIQILNGSEISPRERKDSEIRYVRLVMSRSLANPEEIKQHPRFSELKKFYGIEEEMPSTGTSGPQTMASGLLSITLKCVGPSMGEKPPLTKKLPATTIVGKLKLLCESFFKLQSVNLKLYLQEEGSPMPLLLDNDMESFFDIGIGNESIILGTIQREKMAKGLKKSNFEVLGMCCNSEVALIEKILKGLHGVKEISVMFPTRTVTLVHDLDLISESQITDALNMARLEASLKPEGETKHEKKWPATSTLACGLLLALSFLKYVYLPLEFFAIGAVVVGSPRILLRGIASIRNLSLDINILVLLAVFGTLALGDFLESGIITFLFSIAQWLETVASYKAMATMSSLTNMTPQRAIIAETGDQVDVNEVKINTVLAVKAGDAIPLDGIVVEGKCEVDEKMLTGESFPVTKELDSTVWAGTINLNGYISVKTTALAKDTAVARMTKVVEEAHGRKSRAQRFIDTCAKYYVPGVFLISVGVAVIPMALRVPNIKYWGHMAIVILVSACPCALILSTPVTIFCALTKAATSGLLLKGGDYVEALAGIKILAFDKTGTLTKGEFTVTDFSAVGDYDVNSQLLLYWVTSIESKSSHPMAAALLEYGRLHGIKPIPENVEDFQNFPGEGVYGKINGKDVYIGNRKICVRAGCESEFLSKEERNGYICCGPTLVGAFSLSDTCRYGALEAIEELKSLGVKSAMLTGDSTRAATLVLNQLNHALDIVHAELLPHEKAVIIENFKKDGLMTAMVGDGINDAPALATADVGISMGISGSALAVETGQAILMSNDIRKIPEAIHLARRTFRKLIQNVVFSVVTKALILALALAGYPLVWLAVLTDVGTCLLVILNSMLLLNEKKHKNKRVPSKSKYGLFNKDKKEPLLEKKMDCGEGCCSNVSCEVTIPSTATECEKASCSNSGACGKGVSDDIGRSESCNDGCCGKVRREEEESSCRKKSRCSSYCCKPKNTEVKVDTEKCGSQQCCKESRNICCVDGYNMPEIVIE 1371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0906 1371 SUPERFAMILY Calcium ATPase, transmembrane domain M 673 1242 IPR023298 -
Lele24g0906 1371 ProSiteProfiles Heavy-metal-associated domain profile. 541 607 IPR006121 GO:0046872
Lele24g0906 1371 ProSiteProfiles Leucine-rich repeat profile. 322 343 IPR001611 GO:0005515
Lele24g0906 1371 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 673 1222 IPR027256 GO:0006812|GO:0016020|GO:0019829
Lele24g0906 1371 SUPERFAMILY Ubiquitin-like 441 527 IPR029071 -
Lele24g0906 1371 Gene3D - 710 825 - -
Lele24g0906 1371 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 696 958 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele24g0906 1371 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1027 1199 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele24g0906 1371 Gene3D - 3 88 IPR036859 -
Lele24g0906 1371 FunFam Tubulin-folding cofactor E 236 403 - -
Lele24g0906 1371 CDD P-type_ATPase_HM 623 1221 - -
Lele24g0906 1371 Gene3D - 913 1170 IPR023214 -
Lele24g0906 1371 CDD Ubl_TBCE 447 527 IPR044079 -
Lele24g0906 1371 FunFam Tubulin-folding cofactor E 439 531 - -
Lele24g0906 1371 SUPERFAMILY Calcium ATPase, transduction domain A 737 821 IPR008250 -
Lele24g0906 1371 FunFam Tubulin-folding cofactor E 6 85 - -
Lele24g0906 1371 Gene3D Ribonuclease Inhibitor 105 206 IPR032675 -
Lele24g0906 1371 Gene3D Ribonuclease Inhibitor 316 401 IPR032675 -
Lele24g0906 1371 ProSitePatterns Hypothetical cof family signature 2. 1119 1141 - -
Lele24g0906 1371 SUPERFAMILY HMA, heavy metal-associated domain 537 609 IPR036163 GO:0046872
Lele24g0906 1371 SFLD p-type atpase 905 1172 IPR044492 -
Lele24g0906 1371 ProSiteProfiles Leucine-rich repeat profile. 262 283 IPR001611 GO:0005515
Lele24g0906 1371 PRINTS H+-transporting ATPase (proton pump) signature 1119 1135 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele24g0906 1371 PRINTS H+-transporting ATPase (proton pump) signature 1151 1176 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele24g0906 1371 Gene3D - 439 529 - -
Lele24g0906 1371 ProSiteProfiles CAP-Gly domain profile. 33 76 IPR000938 -
Lele24g0906 1371 FunFam Copper-transporting ATPase 1, putative 711 825 - -
Lele24g0906 1371 SUPERFAMILY L domain-like 128 384 - -
Lele24g0906 1371 Gene3D - 933 1050 IPR023299 GO:0000166
Lele24g0906 1371 PRINTS P-type cation-transporting ATPase superfamily signature 1064 1074 - -
Lele24g0906 1371 PRINTS P-type cation-transporting ATPase superfamily signature 1119 1138 - -
Lele24g0906 1371 PRINTS P-type cation-transporting ATPase superfamily signature 922 936 - -
Lele24g0906 1371 PRINTS P-type cation-transporting ATPase superfamily signature 771 785 - -
Lele24g0906 1371 SMART CAP_GLY_2 13 81 IPR000938 -
Lele24g0906 1371 TIGRFAM ATPase-IB2_Cd: cadmium-translocating P-type ATPase 673 1223 - -
Lele24g0906 1371 Pfam E1-E2 ATPase 732 900 - -
Lele24g0906 1371 Gene3D - 536 608 - -
Lele24g0906 1371 ProSitePatterns E1-E2 ATPases phosphorylation site. 924 930 IPR018303 -
Lele24g0906 1371 ProSitePatterns CAP-Gly domain signature. 33 64 IPR000938 -
Lele24g0906 1371 Pfam CAP-Gly domain 13 79 IPR000938 -
Lele24g0906 1371 SUPERFAMILY Cap-Gly domain 11 147 IPR036859 -
Lele24g0906 1371 CDD HMA 544 606 IPR006121 GO:0046872
Lele24g0906 1371 Gene3D Ribonuclease Inhibitor 207 315 IPR032675 -
Lele24g0906 1371 FunFam Putative cadmium/zinc-transporting ATPase 3 933 1050 - -
Lele24g0906 1371 SUPERFAMILY HAD-like 921 1220 IPR036412 -
Lele24g0906 1371 Pfam haloacid dehalogenase-like hydrolase 918 1133 - -
Lele24g0906 1371 FunFam Tubulin-folding cofactor E 88 222 - -
Lele24g0906 1371 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 536 1226 - -
Lele24g0906 1371 FunFam Putative cadmium/zinc-transporting ATPase 3 536 608 - -
Lele24g0906 1371 SFLD C1.7: P-type atpase like 905 1172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0906 Lele-ChrLele24 6313461 6328960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0906 536 1337 Primary Pumps ATPases AT4G30110 54.231 0.0 869