Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0873 ATGATTCTCGTTTACGCGCAATTTCTTCGTCAAATGGGTGCTTCTTGGTGCCTGCAGGCCAGAAAAAGATTTGCGAGCTTGGGTGGCGATTATTTCTATGAAGCATGCACTAAGGTAAGCAAAAGCAAGGAGGAAGCGAAAGTGTTCCTGACGAAGCCATTCTCATTAGGAGACACGGATACGGCTTATAGGGCCCCTAATCTCTTGCAACGTATATTAAGCCTATTTAAGAATATACGGCCTGGATCTGATCTCTCTCACTTCCAACTGCCGCCTCTTTTCAATTTTCCAAAGTCACAACTTCAGTGCTATGGTGAGTCTGTATACTGCACAGCTTCAGATTTGCTAGGCAAATGCAACAGAGAGCAGAATCCAGTGGATAGGTTCACATCTGTGGTTGCATGGTGCATCTCTACTACTCGCCCTACACTTTTACTTGCTCCTTATAACCCCATTCTTGGAGAGACCCACCATGCTTCAAGGGGAAATCTCAACGTCCTGCTTGAACAGGTTTCACACCATCCTCCCGTATCTGCCCTACATGCAACGAATGAGAAGGAAAACATAGAGATGACATGGTGCCAACAACCTAGTCCAAAGTTTTATGGCACTTCAGTGGAGGCTCAAGTTCTTGGTAAACGGCAGCTGAAGCTCCTGAATCATGGAGAAACATATGAAATGAATTGTCCTCACCTCCAAATCAGAATTCTTCCGGTCCCTGACGTTAATTGGGTTGGAAATGTTAGTATTCGGTGTCGAGAGACTGGTCTGGTGGCAGAGTTAAGCTACAAAAGTAATTCTTTTCTGGGATTTGGGGGGAACGGTAGATTGATCAAAGGGAAGATCCTCAATTCATCGTCATCAAAAGTTCTTTATGAAGTGAATGGTCATTGGGATAGAACTGTGACAATAAAGGACACAAGTAATAAGAAGGTTAAAGTGATATATGATGCAAATGAAGTCATTTCAAAGCTCCAAGCTCCAATCGTCTGCGAACCAAAGTGTGTGAAGCCAACAGAGTCAGCCCTGGTTTGGGGTGAGCTTAGCGAAGCCATAATGAACAAAGAATGGGAGAAAGCGAGAGAAGCAAAGAATGCTGTGGAGGAAAGACAGAGGAAACTGACGAGAGAAAGAGAATCAAGAGGAGAAAATTGGATTCCTAAACATTTTCTTGTGTTTCATAGCAAAGAAGGTGGCTGGGAATGCTCACCCATTGAGAAGTGGGTCCCCTCTGCCCCCATCGTTGCCCTGTAA 1254 0.4458 MILVYAQFLRQMGASWCLQARKRFASLGGDYFYEACTKVSKSKEEAKVFLTKPFSLGDTDTAYRAPNLLQRILSLFKNIRPGSDLSHFQLPPLFNFPKSQLQCYGESVYCTASDLLGKCNREQNPVDRFTSVVAWCISTTRPTLLLAPYNPILGETHHASRGNLNVLLEQVSHHPPVSALHATNEKENIEMTWCQQPSPKFYGTSVEAQVLGKRQLKLLNHGETYEMNCPHLQIRILPVPDVNWVGNVSIRCRETGLVAELSYKSNSFLGFGGNGRLIKGKILNSSSSKVLYEVNGHWDRTVTIKDTSNKKVKVIYDANEVISKLQAPIVCEPKCVKPTESALVWGELSEAIMNKEWEKAREAKNAVEERQRKLTRERESRGENWIPKHFLVFHSKEGGWECSPIEKWVPSAPIVAL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0873 417 ProSitePatterns Oxysterol-binding protein family signature. 169 179 IPR018494 -
Lele24g0873 417 Coils Coil 357 380 - -
Lele24g0873 417 Pfam Oxysterol-binding protein 76 345 IPR000648 GO:0008289
Lele24g0873 417 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 72 390 IPR000648 GO:0008289
Lele24g0873 417 SUPERFAMILY Oxysterol-binding protein-like 70 402 IPR037239 -
Lele24g0873 417 FunFam Oxysterol-binding protein-related protein 4C 152 329 - -
Lele24g0873 417 Gene3D - 337 407 - -
Lele24g0873 417 FunFam Oxysterol-binding protein-related protein 4B 337 409 - -
Lele24g0873 417 Gene3D - 153 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0873 Lele-ChrLele24 5993335 5997321 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0873 24 5993335 5997321 Lele17g0548 17 17636307 17640305 CCT
Lele24g0873 24 5993335 5997321 Lele19g0990 19 6256809 6266229 CCT
Lele24g0873 24 5993335 5997321 Lele20g0454 20 12228118 12231715 CCT
Lele17g0534 17 17506586 17509042 Lele24g0873 24 5993335 5997321 CCT
Lele21g0899 21 6058067 6061906 Lele24g0873 24 5993335 5997321 hybridization
Lele22g0900 22 6108012 6112098 Lele24g0873 24 5993335 5997321 hybridization