Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0838 ATGACGGACCAGACCGAGTTCAGTGTTCTATGCAGCCTCTTCACATGGACCCAGAGAAGCAAGTCGTCCGCCAAGAAGCGCTCCAAGTTCCGCAAATTCCTCGATACCTTTTGCAAAGACAGAAATTATTTCAGTGCTATTCGCTTGATTCTTCCCAATCTCGACCGAGAGCGAGGCTCCTATGGCCTCAAGGAGTCCGTTCTCGCTACCTCCCTCATCGACGCTCTTGGCATGTCCAGGGAGTCCGAGGACGCGCTACGCCTCATCAATTGGCGCAAAGGTGGTGCAAAGACTGGTGCCAATGCCGGAAATTTTGCTCTTGTCGCTGCTGAGGTGCTGCAGCGTAGGCAAGGTTTGGCATCTGGTAGATTGACAATAAGGGAGTTAAATGAGTTGCTTGATAAACTAGCTTCAAGTGAAAGCAGATTTTTCAATGTGGTTGTGCTGTGGCTTGACCATCGTTACAGGGCTGAGAAGACTTCAGTTCTTTCTAACCTTATTCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATACTCAAAGATCTAAAGCTTGGAATTAGTGAAAAGAGCATTTTCCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTAACTTGTGACTTGAAATTAGTTTGTGAAAAACTAAAGGATCGGAATCAACGCCATAAGAGACAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAACTAGCAAAGAGAGTTGCTAGTGCAACTGAAGCTTGGAAAAAGGTTGTTTTATTCAACTGTTTCCTACAATACATATGGAACTTTCTTGACCATTCAGAATACCAACATGGGATATCAGACATCATAGTACAAAATATTCTTGTTGACAGGTGTATTCTTGATGGTGAAATGTTGGTTTGGGATAAATCCTTGAACCGTTTTGCTGAATTTGGTTCAAATCAGGAAATAGCAAAGGCAGCAAAGGATGGGCTTGATAGCTATAGACAGTTATGTTACGTTGCATTTGATATCCTTTATGTTGGAGATACAAGTGTAATACATCAGACTTTGAAGGAAAGACACGAGCTTCTCCGTAAAGTTGTGATGCCCTTAAAAGGTGGTTTGGAAATTTTAATACCTAATGGTGGCCTCAACTCTAATTGTCCATCTGGGGATGGTGATAGTTTATGGTTCAATGGAGACGAGGGCATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGTGACCGCAGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATACATGCTGGTTCTGATCTGGATGCACTTATCATAGGTGGTTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTGGGCCTAGCAGATCGTCCCTCCCCCAGTGCACATCCCAAGCGATTTACCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCACATTTCAGGCCAGGTTTGCTTGTTCATAGAGCTTGTCTGTATGAATTCCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTCACTAACCATTCAAAAGAGCGGCCTGATGTATCAATAATTCTCTCTATAACCAGTGACATTCGAACTATAGCATCTGAGGTATTTGCTGCACCTTACAGTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAACCCTGGTATGAATGTCTTGATGTGCAGTCATTTATAGAACTTGTGCATTCTAGCAATGGCACCACAAAGGCCAGCACAGAGTATGGCAGCATGCAGGATGGTAAATCAAAACGCCTGAAATCCTCTAAAAGGGAAGGGGAAAAAAACATGTCCGTTTACCTCTGCTACATGGAGAAGCCAGGGGGTGCAATAAAATTTTCCTTGACAGATTCAGATTTCGTCAATGTGCCTCCATCCCATTCTCTTGATTCCTTGCATAAGATGATTGCTGAGAATGGGGGCACTTTCTCGATGAACTTGAACAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTACTCTCTCTATCTCTACTCCCTCCCTTTCCATGCATCTTCCTTTTTATGTGCATGCCTACAGGTACTTCCTTTTCCTTTCTGAACTCACAAAGGAGAAGTTATATGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGAATCTTGATTATGCGGACATCAAGCAGGGAGTTGATCTTGCCCTAATCTATGACTTTTTAGCATATGATTATGATTCTGTTATCCCTAATAGAATGGAGAGCTATTCCCCTTCAAAAAGTATCAGCCGTATTAGGAAAAAAAGTCAGATGGAAGTTGAAGATAAAATGAACCTGAATCATATACCCATGAAAGGAGATTGGGAAGTTCTGTCAAGACTTTCGCTGAGGAGATTGCAGTCTGAAATTCTCATGCGTGGTGGCAAAGTTACCGATAGTCCCACTTCTGCTACCCACTTTGTGGCCTTGTCAGTTCCAGGATATAATGTTGACTTTAAAGAAATGTTAACAAGGAAACTAACCTTGCATTTTTTCTTTTTTTTCCCTTCCTTCCCTGGGGTGGGTGGATTTTCAACTGCATATAGTTTCACTTCAGTTGAAGGAAAATTTCTTTCGAGCAAGAGGTTGCATGTTGTTGGATCTCAGTGGCTTGAAGATTGTTTGGAACAAGGAGGAAGATTACCAGAACAAACGTATACATTGAAACCCAGCGGAATAGAAGAACCAACTTCTGAAGAGTGCGAACTTGGCTTGGCTTTAGGGGGTTATTGTGGTGGGGATAATGTAGAAGACCAAAATTTGTCACTTGTCTCTGAAAAGGGAAGTCAGCGGAGAAGTTTAAAACCTGTTGAAAGTTTGGTGCCCTTGGAGAAGAGTGGCAAAAGGAAACGTGGAAGACCTGTAGTAGGCAGAGGCAGTAAAATGGTTAAAACAGCTGGCAACCAAACTCATCGATCCCGAGCACGTATTGGAAAAGGGCCTGCAAAAATATGTGAATATGAAACAGATGAAAGTGGTTCTCATGATGGAAAGTCATGTGAAGGTGAGATTGACTCGAAAGAATTCAGCCGTGACTGTCGTAATGGCGCAGAAGTCACCGACACTGTGATATTACAAAATCCTGAGCCATCAAAACGAGACGATGCAGTTAAGCAAGAGGTTTTGAAGGAAGTTGAACGTGACGAAAATTCTGTTCCCGAAATTGAAATGACCGAGCAGCATAATGACCAAAGCACTAAGGCTGAACAACATGAAGTTATGGCTGATCCAATACAGGCGATGCTTTTTGACATGTTCCCTAGCCTTGCAACAAAGAAAGTTGATGAAACAAAGAATGTTATTGTTGACGATGAAAAGCCAACAACAAAGAATGATAATGTTAAAGATGTTAAGCCAACAAAGAATGATAGTGTCAAAGATGATAAGCCACCTGTACAATCCAAAGCTGGCCCTTCAAGGAAAAAGAAAGTTAGCTATAAGGATATTGCTAATGAGCTGCTTAAGGATTAG 3525 0.4218 MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDTFCKDRNYFSAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGLASGRLTIRELNELLDKLASSESRFFNVVVLWLDHRYRAEKTSVLSNLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVASATEAWKKVVLFNCFLQYIWNFLDHSEYQHGISDIIVQNILVDRCILDGEMLVWDKSLNRFAEFGSNQEIAKAAKDGLDSYRQLCYVAFDILYVGDTSVIHQTLKERHELLRKVVMPLKGGLEILIPNGGLNSNCPSGDGDSLWFNGDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIHAGSDLDALIIGGYYGSGRRGGEVAQFLVGLADRPSPSAHPKRFTSFCRVGTGLSDDELDALVTKLKPHFRPGLLVHRACLYEFPKKRPPSFYQVTNHSKERPDVSIILSITSDIRTIASEVFAAPYSLRFPRIDRVRYDKPWYECLDVQSFIELVHSSNGTTKASTEYGSMQDGKSKRLKSSKREGEKNMSVYLCYMEKPGGAIKFSLTDSDFVNVPPSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADSKGTLSISTPSLSMHLPFYVHAYRYFLFLSELTKEKLYEEIDEFSDSYYLNLDYADIKQGVDLALIYDFLAYDYDSVIPNRMESYSPSKSISRIRKKSQMEVEDKMNLNHIPMKGDWEVLSRLSLRRLQSEILMRGGKVTDSPTSATHFVALSVPGYNVDFKEMLTRKLTLHFFFFFPSFPGVGGFSTAYSFTSVEGKFLSSKRLHVVGSQWLEDCLEQGGRLPEQTYTLKPSGIEEPTSEECELGLALGGYCGGDNVEDQNLSLVSEKGSQRRSLKPVESLVPLEKSGKRKRGRPVVGRGSKMVKTAGNQTHRSRARIGKGPAKICEYETDESGSHDGKSCEGEIDSKEFSRDCRNGAEVTDTVILQNPEPSKRDDAVKQEVLKEVERDENSVPEIEMTEQHNDQSTKAEQHEVMADPIQAMLFDMFPSLATKKVDETKNVIVDDEKPTTKNDNVKDVKPTKNDSVKDDKPPVQSKAGPSRKKKVSYKDIANELLKD 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0838 1174 MobiDBLite consensus disorder prediction 962 996 - -
Lele24g0838 1174 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 199 421 - -
Lele24g0838 1174 Gene3D - 1 232 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele24g0838 1174 MobiDBLite consensus disorder prediction 1062 1088 - -
Lele24g0838 1174 SUPERFAMILY BRCT domain 642 679 IPR036420 -
Lele24g0838 1174 MobiDBLite consensus disorder prediction 1062 1093 - -
Lele24g0838 1174 MobiDBLite consensus disorder prediction 1111 1174 - -
Lele24g0838 1174 CDD Adenylation_DNA_ligase_IV 228 424 IPR044125 GO:0005524
Lele24g0838 1174 Gene3D DNA ligase/mRNA capping enzyme 268 422 - -
Lele24g0838 1174 FunFam DNA ligase 423 586 - -
Lele24g0838 1174 SUPERFAMILY BRCT domain 799 908 IPR036420 -
Lele24g0838 1174 SUPERFAMILY Nucleic acid-binding proteins 428 581 IPR012340 -
Lele24g0838 1174 ProSitePatterns ATP-dependent DNA ligase signature 2. 396 420 IPR016059 GO:0003909
Lele24g0838 1174 Pfam twin BRCT domain 645 679 IPR001357 -
Lele24g0838 1174 ProSiteProfiles BRCT domain profile. 804 906 IPR001357 -
Lele24g0838 1174 Pfam ATP dependent DNA ligase C terminal region 444 565 IPR012309 GO:0003910|GO:0006281|GO:0006310
Lele24g0838 1174 MobiDBLite consensus disorder prediction 1114 1174 - -
Lele24g0838 1174 MobiDBLite consensus disorder prediction 587 609 - -
Lele24g0838 1174 Gene3D BRCT domain 795 920 IPR036420 -
Lele24g0838 1174 Gene3D - 424 586 IPR012340 -
Lele24g0838 1174 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 221 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele24g0838 1174 Gene3D BRCT domain 630 687 IPR036420 -
Lele24g0838 1174 Pfam ATP dependent DNA ligase domain 290 420 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele24g0838 1174 Pfam DNA ligase N terminus 6 200 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Lele24g0838 1174 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 457 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Lele24g0838 1174 FunFam DNA ligase 1 232 - -
Lele24g0838 1174 PANTHER DNA LIGASE 4 268 1168 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0838 Lele-ChrLele24 5676293 5687941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0838 293 582 Core DNA Replication Machinery Family AT1G08130 26.403 4.13e-18 88.2