Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0800 ATGGCTTCGTATCACATTGAATTGGCACGGTCTTTGCAGCGGCCACCTTTGATCCTTCGCCTCTGCATCTTATTCCCGCAACTCATTTCATTTGCGACAATGGCGACACAGATGAGCAAGAAGAGAAAGTTCGTTGCCGACGGAGTTTTCTTCGCCGAGCTGAATGAGGTTCTGACTAGAGAGCTAGCTGAAGATGGATACTCTGGTGTCGAGGTTAGGGTTACCCCAATGCGCACTGAGATCATTATCAGAGCCACTCGAACTCAGAACGTTCTTGGGGAGAAGGGAAGGAGAATTAGGGAGTTGACTTCTGTTGTACAGAAGAGATTTAAGTTTCCCGAGAATAGTGTGGAACTATATGCTGAGAAGGTTAACAACAGAGGTCTCTGCGCTATTGCCCAGGCAGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTTGCGGTACGGAGGGCTTGCTACGGTGTTCTGAGATTTGTTATGGAAAGTGGTGCCAAGGGATGTGAGGTTATTGTTAGTGGAAAATTGAGGGCTCAGAGAGCTAAGTCCATGAAGTTCAAGGATGGATACATGATTTCTTCTGGGCAGCCAGTCAGGGACTACATTGACTCTGCTGTAAGACATGTACTTCTAAGACAGGGTGTTCTTGGTATCAAGGTCAGGATCATGCTTGATTGGGACCCTAAAGGAAAGCAGGGTCCCAAAACTCCTCTCCCTGATGTTGTCACAATCCACCCTCCAAAGGAGGAGGAAGAATATGGCCGGCCTGCTCCTGTTCCGACAACTGATATCGAGATTCCTCTTGTTGCTTGA 810 0.4802 MASYHIELARSLQRPPLILRLCILFPQLISFATMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDVVTIHPPKEEEEYGRPAPVPTTDIEIPLVA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0800 269 SUPERFAMILY Ribosomal protein S3 C-terminal domain 126 224 IPR036419 -
Lele24g0800 269 TIGRFAM uS3_euk_arch: ribosomal protein uS3 41 243 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lele24g0800 269 FunFam 40S ribosomal protein S3 126 260 - -
Lele24g0800 269 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 43 132 IPR009019 GO:0003723
Lele24g0800 269 FunFam 40S ribosomal protein S3 34 125 - -
Lele24g0800 269 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 39 231 - -
Lele24g0800 269 Pfam KH domain 53 126 IPR004044 GO:0003723
Lele24g0800 269 Pfam Ribosomal protein S3, C-terminal domain 139 221 IPR001351 GO:0003735|GO:0006412
Lele24g0800 269 ProSiteProfiles Type-2 KH domain profile. 54 125 IPR004044 GO:0003723
Lele24g0800 269 ProSitePatterns Ribosomal protein S3 signature. 180 216 IPR018280 -
Lele24g0800 269 CDD 40S_S3_KH 48 128 - -
Lele24g0800 269 Gene3D - 31 124 IPR015946 -
Lele24g0800 269 Gene3D - 126 252 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0800 Lele-ChrLele24 5397790 5400532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0800 34 266 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 87.554 7.21e-151 419