Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0782 ATGGGCGGAGACGCCACCCACTGGGACGAAAATGCTTACAGGGAAACCATATTGAAGGAGAGAGAGATTGAAACCCGAACCGTCTTTAGAACCGCTTGGGCTCCCACCCGAAACCCTAACCCTGATACTCTCGTTGTTGCGTCCAGCGACGGATCCATCGCCTCCTATTCTATCCCTTCTTGCATCTCCAAACTCCCGTTTGGTTTTACCAACATAAAGACACAGAAATTGTTTGCTGAACCAACTTGCTTCATTCAAGGGCACGATGGACCTGCTTATGATGTCAAGTTTTACGGGGATGATGAAGATTCTCTGTTATTGAGTTGTGGCGATGATGGTCGCATTCGAGGATGGAGATGGAAAGAACTTGCAGGATCAAAGGATTCATCATCTTTGCTCGGAAGCGGTATCAAGCCTTTAATTGATCTAGTGAATCCTCAGCACAAAGGCCCATGGGGTGCCCTTTCACCTATTCCTGAGAATAATGCTATTGCTGTTGATATCAAGGGAGGATCTGTTTTCTCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGCAACTGGTAAAGTGAAAACTGTATTTAAGGGGCACTTGGACTACTTGCATTGTTTGGTTGCCCGAAACTCAGCCAGCCAGATTATAACAGGTTCAGAGGATGGGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATTAAAGTGATTGATCCTGCTAAAGATTTGAAGTCAAAAGGATTTGGCTCATGGATTAGTTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGTGGCTATGGCCGGAATATATCGCTCTGGAACTTGCCTGCTTTAGAGTGCTTATCAAAAATTTCAACGGGTTCTTCTGTACAGGACATGTTATTTGACAACAATCAAATATTGGCAGTTGGTGCAGATCCTCTACTTAATCGATTTGACATGAATGGTGTGATCCTTTCACAAATACAGTGCGCTCCTCCATCATCGTTTTCTATCTCCTTACATCCATCAGGGATCATGGCAGTTGGAGGTTGTGGATGTCTTGTGGATGTTATCTCCCAATTTGGAAGTCACATGTGCACATTTCGCTGCCGAAGCCTTTAA 1113 0.4465 MGGDATHWDENAYRETILKEREIETRTVFRTAWAPTRNPNPDTLVVASSDGSIASYSIPSCISKLPFGFTNIKTQKLFAEPTCFIQGHDGPAYDVKFYGDDEDSLLLSCGDDGRIRGWRWKELAGSKDSSSLLGSGIKPLIDLVNPQHKGPWGALSPIPENNAIAVDIKGGSVFSASGDSCAYCWDVATGKVKTVFKGHLDYLHCLVARNSASQIITGSEDGTARIWDCKSGKCIKVIDPAKDLKSKGFGSWISCVALDASESWLACGYGRNISLWNLPALECLSKISTGSSVQDMLFDNNQILAVGADPLLNRFDMNGVILSQIQCAPPSSFSISLHPSGIMAVGGCGCLVDVISQFGSHMCTFRCRSL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0782 370 Gene3D - 145 368 IPR015943 GO:0005515
Lele24g0782 370 SMART WD40_4 78 119 IPR001680 GO:0005515
Lele24g0782 370 SMART WD40_4 189 228 IPR001680 GO:0005515
Lele24g0782 370 SMART WD40_4 151 186 IPR001680 GO:0005515
Lele24g0782 370 SMART WD40_4 231 277 IPR001680 GO:0005515
Lele24g0782 370 SMART WD40_4 16 57 IPR001680 GO:0005515
Lele24g0782 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 85 118 IPR001680 GO:0005515
Lele24g0782 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Lele24g0782 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Lele24g0782 370 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 368 IPR042626 -
Lele24g0782 370 SUPERFAMILY WD40 repeat-like 33 356 IPR036322 GO:0005515
Lele24g0782 370 Pfam WD domain, G-beta repeat 248 277 IPR001680 GO:0005515
Lele24g0782 370 Pfam WD domain, G-beta repeat 192 228 IPR001680 GO:0005515
Lele24g0782 370 Gene3D - 8 130 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0782 Lele-ChrLele24 5269331 5273435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0782 169 233 Eukaryotic Initiation Factors Gene Family AT2G46280 35.385 5.92e-06 45.4