Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele24g0781 | ATGCACCGAAAAAAGCTCCCGAAAGGGATAAACCCCATATACTACCAGCGCCTTCCCCTCTTTGGCTATTTCTTCGATAAAAAACCATTCGTCATCCGAAAAGTCATGGCTGGAGTAGCACCCGATAGTTCACAATTTGACGCTCGTCAATATGATTCAAAAATGGAACTGATTACAACTGACGGGCAGGACTTCTTTACATCTTATGATGAGGTTCATGATAGTTTTGATGCCATGGGTTTGCATGAGAATCTTCTCAGAGGCATTTATGCATATGGATTTGAGAAGCCTTCGGCTATACAGCAAAGGGGAATAGTTCCCTTCTGTAAGGGACTTGATGTTATTCAGCAAGCTCAGTCTGGAACTGGAAAGACAGCAACTTTCTGCTCTGGGGTTTTGCAGCAGCTTGACTATAGTGTGATGGAATGCCAAGCTTTGGTATTAGCACCAACTCGAGAACTTGCTCAACAGATTGAGAAGGTTATGCGAGCACTTGGAGACTATCTTGGTGTGAAGGTGCATGCATGCGTGGGGGGAACTAGTGTTCGTGAAGACCAACGCATTCTATCTAGTGGAGTTCATGTTGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTACGCAGGCAGTCGCTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTTAAAGATCAGATTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGACCAGATGCGAAGCCGGGACCACACAGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATCATGCGTGAATTCCGTTCTGGATCTTCTCGTGTTTTAATAACAACAGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCACTAGTTATTAATTATGATCTTCCTACTCAGCCTGAGAACTATCTCCATCGTATTGGCCGTAGTGGGAGGTTTGGCAGGAAAGGTGCTGCAATCAATTTTGTGACCAGGGACGATGAAAGAATGTTGTTTGACATCCAGAGATTTTATAATGTGGTAATTGAGGAGCTGCCATCAAATGTTGCTGAACTCCTATAA | 1113 | 0.4394 | MHRKKLPKGINPIYYQRLPLFGYFFDKKPFVIRKVMAGVAPDSSQFDARQYDSKMELITTDGQDFFTSYDEVHDSFDAMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSVMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGAAINFVTRDDERMLFDIQRFYNVVIEELPSNVAELL | 370 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele24g0781 | 370 | PANTHER | RNA HELICASE | 59 | 241 | - | - | |
| Lele24g0781 | 370 | SMART | helicmild6 | 250 | 331 | IPR001650 | - | |
| Lele24g0781 | 370 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 143 | 351 | IPR027417 | - | |
| Lele24g0781 | 370 | SMART | ultradead3 | 93 | 292 | IPR014001 | - | |
| Lele24g0781 | 370 | FunFam | Eukaryotic initiation factor 4A-III | 232 | 370 | - | - | |
| Lele24g0781 | 370 | CDD | DEADc_EIF4A | 78 | 249 | - | - | |
| Lele24g0781 | 370 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 221 | 229 | IPR000629 | - | |
| Lele24g0781 | 370 | Gene3D | - | 118 | 223 | IPR027417 | - | |
| Lele24g0781 | 370 | Pfam | DEAD/DEAH box helicase | 99 | 241 | IPR011545 | GO:0003676|GO:0005524 | |
| Lele24g0781 | 370 | Gene3D | - | 224 | 369 | IPR027417 | - | |
| Lele24g0781 | 370 | CDD | SF2_C_DEAD | 238 | 340 | - | - | |
| Lele24g0781 | 370 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 74 | 102 | IPR014014 | GO:0003724 | |
| Lele24g0781 | 370 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 105 | 264 | IPR014001 | - | |
| Lele24g0781 | 370 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 224 | 370 | IPR001650 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele24g0781 | Lele-ChrLele24 | 5263273 | 5268357 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele24g0781 | 238 | 348 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 97.297 | 5.41e-71 | 226 |